Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04280

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04265 and ABZR87_RS04270 are separated by 60 nucleotidesABZR87_RS04270 and ABZR87_RS04275 are separated by 18 nucleotidesABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotidesABZR87_RS04280 and ABZR87_RS04285 are separated by 8 nucleotides ABZR87_RS04265: ABZR87_RS04265 - phenylalanine 4-monooxygenase, at 890,732 to 891,676 _RS04265 ABZR87_RS04270: ABZR87_RS04270 - 4a-hydroxytetrahydrobiopterin dehydratase, at 891,737 to 892,051 _RS04270 ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297 _RS04275 ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084 _RS04280 ABZR87_RS04285: ABZR87_RS04285 - sensor histidine kinase, at 893,093 to 894,766 _RS04285 Position (kb) 892 893 894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 891.411 kb on - strand, within ABZR87_RS04265at 891.411 kb on - strand, within ABZR87_RS04265at 891.411 kb on - strand, within ABZR87_RS04265at 891.503 kb on + strand, within ABZR87_RS04265at 891.503 kb on + strand, within ABZR87_RS04265at 891.503 kb on + strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.504 kb on - strand, within ABZR87_RS04265at 891.566 kb on + strand, within ABZR87_RS04265at 891.567 kb on - strand, within ABZR87_RS04265at 891.567 kb on - strand, within ABZR87_RS04265at 891.567 kb on - strand, within ABZR87_RS04265at 891.567 kb on - strand, within ABZR87_RS04265at 891.567 kb on - strand, within ABZR87_RS04265at 891.628 kb on - strandat 891.628 kb on - strandat 891.628 kb on - strandat 891.699 kb on + strandat 891.699 kb on + strandat 891.699 kb on + strandat 891.699 kb on + strandat 891.699 kb on + strandat 891.700 kb on - strandat 891.700 kb on - strandat 891.700 kb on - strandat 891.700 kb on - strandat 891.700 kb on - strandat 891.700 kb on - strandat 891.701 kb on + strandat 891.701 kb on + strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.702 kb on - strandat 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.946 kb on + strand, within ABZR87_RS04270at 891.947 kb on - strand, within ABZR87_RS04270at 891.947 kb on - strand, within ABZR87_RS04270at 891.947 kb on - strand, within ABZR87_RS04270at 891.947 kb on - strand, within ABZR87_RS04270at 892.049 kb on + strandat 892.049 kb on + strandat 892.049 kb on + strandat 892.050 kb on - strandat 892.101 kb on + strand, within ABZR87_RS04275at 892.101 kb on + strand, within ABZR87_RS04275at 892.101 kb on + strand, within ABZR87_RS04275at 892.101 kb on + strand, within ABZR87_RS04275at 892.101 kb on + strand, within ABZR87_RS04275at 892.102 kb on - strand, within ABZR87_RS04275at 892.102 kb on - strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.157 kb on + strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.158 kb on - strand, within ABZR87_RS04275at 892.173 kb on + strand, within ABZR87_RS04275at 892.173 kb on + strand, within ABZR87_RS04275at 892.174 kb on - strand, within ABZR87_RS04275at 892.174 kb on - strand, within ABZR87_RS04275at 892.174 kb on - strand, within ABZR87_RS04275at 892.308 kb on + strandat 892.308 kb on + strandat 892.308 kb on + strandat 892.308 kb on + strandat 892.308 kb on + strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.309 kb on - strandat 892.665 kb on + strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.666 kb on - strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.986 kb on + strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 892.987 kb on - strand, within ABZR87_RS04280at 893.055 kb on + strandat 893.082 kb on + strandat 893.082 kb on + strandat 893.082 kb on + strandat 893.083 kb on - strandat 893.240 kb on + strandat 893.240 kb on + strandat 893.241 kb on - strandat 893.241 kb on - strandat 893.241 kb on - strandat 893.258 kb on + strandat 893.258 kb on + strandat 893.259 kb on - strandat 893.357 kb on + strand, within ABZR87_RS04285at 893.357 kb on + strand, within ABZR87_RS04285at 893.357 kb on + strand, within ABZR87_RS04285at 893.358 kb on - strand, within ABZR87_RS04285at 893.414 kb on + strand, within ABZR87_RS04285at 893.414 kb on + strand, within ABZR87_RS04285at 893.415 kb on - strand, within ABZR87_RS04285at 893.415 kb on - strand, within ABZR87_RS04285at 893.415 kb on - strand, within ABZR87_RS04285at 893.471 kb on + strand, within ABZR87_RS04285at 893.472 kb on - strand, within ABZR87_RS04285at 893.513 kb on + strand, within ABZR87_RS04285at 893.513 kb on + strand, within ABZR87_RS04285at 893.514 kb on - strand, within ABZR87_RS04285at 893.514 kb on - strand, within ABZR87_RS04285

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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891,411 - ABZR87_RS04265 0.72 -2.0
891,411 - ABZR87_RS04265 0.72 -1.1
891,411 - ABZR87_RS04265 0.72 +0.6
891,503 + ABZR87_RS04265 0.82 -1.2
891,503 + ABZR87_RS04265 0.82 +0.8
891,503 + ABZR87_RS04265 0.82 -0.7
891,504 - ABZR87_RS04265 0.82 -0.2
891,504 - ABZR87_RS04265 0.82 -2.6
891,504 - ABZR87_RS04265 0.82 -1.8
891,504 - ABZR87_RS04265 0.82 -1.1
891,504 - ABZR87_RS04265 0.82 -1.9
891,504 - ABZR87_RS04265 0.82 +1.2
891,504 - ABZR87_RS04265 0.82 -1.5
891,504 - ABZR87_RS04265 0.82 +0.3
891,566 + ABZR87_RS04265 0.88 -0.6
891,567 - ABZR87_RS04265 0.88 +0.2
891,567 - ABZR87_RS04265 0.88 -2.1
891,567 - ABZR87_RS04265 0.88 -1.4
891,567 - ABZR87_RS04265 0.88 -0.3
891,567 - ABZR87_RS04265 0.88 -0.7
891,628 - -1.7
891,628 - -1.3
891,628 - +0.1
891,699 + -0.7
891,699 + -0.6
891,699 + -0.2
891,699 + +1.3
891,699 + -1.7
891,700 - -0.6
891,700 - -0.4
891,700 - -0.0
891,700 - -1.1
891,700 - +1.1
891,700 - -1.2
891,701 + -1.4
891,701 + -0.2
891,702 - +1.3
891,702 - +0.0
891,702 - +0.6
891,702 - +1.0
891,702 - -0.1
891,702 - +0.6
891,702 - +0.1
891,946 + ABZR87_RS04270 0.66 +0.5
891,946 + ABZR87_RS04270 0.66 -0.5
891,946 + ABZR87_RS04270 0.66 -1.3
891,946 + ABZR87_RS04270 0.66 -0.7
891,946 + ABZR87_RS04270 0.66 +1.6
891,946 + ABZR87_RS04270 0.66 -0.3
891,946 + ABZR87_RS04270 0.66 -1.6
891,946 + ABZR87_RS04270 0.66 -3.2
891,946 + ABZR87_RS04270 0.66 -1.3
891,946 + ABZR87_RS04270 0.66 -0.6
891,947 - ABZR87_RS04270 0.67 +1.1
891,947 - ABZR87_RS04270 0.67 -1.9
891,947 - ABZR87_RS04270 0.67 -2.3
891,947 - ABZR87_RS04270 0.67 +2.6
892,049 + +0.5
892,049 + -0.6
892,049 + -0.3
892,050 - -0.1
892,101 + ABZR87_RS04275 0.14 -0.2
892,101 + ABZR87_RS04275 0.14 -0.1
892,101 + ABZR87_RS04275 0.14 +0.5
892,101 + ABZR87_RS04275 0.14 +0.2
892,101 + ABZR87_RS04275 0.14 +0.1
892,102 - ABZR87_RS04275 0.14 -0.3
892,102 - ABZR87_RS04275 0.14 +0.4
892,157 + ABZR87_RS04275 0.38 -0.0
892,157 + ABZR87_RS04275 0.38 +0.5
892,157 + ABZR87_RS04275 0.38 -0.3
892,157 + ABZR87_RS04275 0.38 +1.6
892,157 + ABZR87_RS04275 0.38 -0.4
892,157 + ABZR87_RS04275 0.38 -1.5
892,157 + ABZR87_RS04275 0.38 -2.1
892,157 + ABZR87_RS04275 0.38 -0.5
892,157 + ABZR87_RS04275 0.38 +0.3
892,157 + ABZR87_RS04275 0.38 -0.7
892,158 - ABZR87_RS04275 0.39 -0.6
892,158 - ABZR87_RS04275 0.39 -0.8
892,158 - ABZR87_RS04275 0.39 -0.6
892,158 - ABZR87_RS04275 0.39 -0.2
892,158 - ABZR87_RS04275 0.39 +0.8
892,158 - ABZR87_RS04275 0.39 +0.3
892,173 + ABZR87_RS04275 0.45 -0.5
892,173 + ABZR87_RS04275 0.45 -0.3
892,174 - ABZR87_RS04275 0.46 -0.1
892,174 - ABZR87_RS04275 0.46 +0.2
892,174 - ABZR87_RS04275 0.46 +0.9
892,308 + +0.3
892,308 + -0.4
892,308 + -1.1
892,308 + -1.1
892,308 + -1.2
892,309 - +0.5
892,309 - -0.4
892,309 - -1.1
892,309 - +0.5
892,309 - -1.4
892,309 - +0.4
892,309 - +1.1
892,665 + ABZR87_RS04280 0.41 -2.3
892,666 - ABZR87_RS04280 0.41 +0.9
892,666 - ABZR87_RS04280 0.41 +1.3
892,666 - ABZR87_RS04280 0.41 +0.8
892,666 - ABZR87_RS04280 0.41 -0.4
892,666 - ABZR87_RS04280 0.41 -0.3
892,666 - ABZR87_RS04280 0.41 -1.1
892,986 + ABZR87_RS04280 0.86 +0.6
892,986 + ABZR87_RS04280 0.86 -0.4
892,986 + ABZR87_RS04280 0.86 -1.3
892,986 + ABZR87_RS04280 0.86 +0.0
892,986 + ABZR87_RS04280 0.86 -0.3
892,986 + ABZR87_RS04280 0.86 +0.4
892,986 + ABZR87_RS04280 0.86 +0.4
892,986 + ABZR87_RS04280 0.86 -0.8
892,986 + ABZR87_RS04280 0.86 -0.2
892,986 + ABZR87_RS04280 0.86 -0.9
892,987 - ABZR87_RS04280 0.86 -2.3
892,987 - ABZR87_RS04280 0.86 +0.1
892,987 - ABZR87_RS04280 0.86 -0.9
892,987 - ABZR87_RS04280 0.86 -0.1
892,987 - ABZR87_RS04280 0.86 +0.3
892,987 - ABZR87_RS04280 0.86 -0.4
892,987 - ABZR87_RS04280 0.86 -0.2
892,987 - ABZR87_RS04280 0.86 +0.0
892,987 - ABZR87_RS04280 0.86 +0.5
892,987 - ABZR87_RS04280 0.86 +0.0
892,987 - ABZR87_RS04280 0.86 +1.1
892,987 - ABZR87_RS04280 0.86 -1.7
892,987 - ABZR87_RS04280 0.86 -0.4
892,987 - ABZR87_RS04280 0.86 -0.1
892,987 - ABZR87_RS04280 0.86 +1.6
893,055 + -0.3
893,082 + -0.6
893,082 + +0.2
893,082 + +1.1
893,083 - +0.9
893,240 + +0.0
893,240 + -1.2
893,241 - -0.0
893,241 - -0.7
893,241 - +0.3
893,258 + +1.8
893,258 + +0.1
893,259 - -0.5
893,357 + ABZR87_RS04285 0.16 +0.8
893,357 + ABZR87_RS04285 0.16 +0.1
893,357 + ABZR87_RS04285 0.16 +0.8
893,358 - ABZR87_RS04285 0.16 +0.1
893,414 + ABZR87_RS04285 0.19 -0.3
893,414 + ABZR87_RS04285 0.19 -0.9
893,415 - ABZR87_RS04285 0.19 +0.3
893,415 - ABZR87_RS04285 0.19 -0.3
893,415 - ABZR87_RS04285 0.19 +0.3
893,471 + ABZR87_RS04285 0.23 -1.5
893,472 - ABZR87_RS04285 0.23 +1.7
893,513 + ABZR87_RS04285 0.25 -0.6
893,513 + ABZR87_RS04285 0.25 -0.1
893,514 - ABZR87_RS04285 0.25 +0.1
893,514 - ABZR87_RS04285 0.25 -1.1

Or see this region's nucleotide sequence