Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04035 and ABZR87_RS04040 are separated by 172 nucleotides ABZR87_RS04040 and ABZR87_RS04045 are separated by 13 nucleotides ABZR87_RS04045 and ABZR87_RS04050 are separated by 115 nucleotides ABZR87_RS04050 and ABZR87_RS04055 are separated by 20 nucleotides
ABZR87_RS04035: ABZR87_RS04035 - phosphate ABC transporter substrate-binding protein PstS, at 846,585 to 847,646
_RS04035
ABZR87_RS04040: ABZR87_RS04040 - DUF3562 domain-containing protein, at 847,819 to 848,022
_RS04040
ABZR87_RS04045: ABZR87_RS04045 - alpha/beta hydrolase, at 848,036 to 848,983
_RS04045
ABZR87_RS04050: ABZR87_RS04050 - CoA-binding protein, at 849,099 to 849,560
_RS04050
ABZR87_RS04055: ABZR87_RS04055 - RsiV family protein, at 849,581 to 850,723
_RS04055
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1
2 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.086 kb on + strand, within ABZR87_RS04035 at 847.087 kb on - strand, within ABZR87_RS04035 at 847.123 kb on - strand, within ABZR87_RS04035 at 847.123 kb on - strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.234 kb on - strand, within ABZR87_RS04035 at 847.234 kb on - strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.494 kb on + strand, within ABZR87_RS04035 at 847.495 kb on - strand, within ABZR87_RS04035 at 847.567 kb on - strand at 847.593 kb on - strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.754 kb on + strand at 847.754 kb on + strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.825 kb on - strand at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.954 kb on + strand, within ABZR87_RS04040 at 847.954 kb on + strand, within ABZR87_RS04040 at 847.955 kb on - strand, within ABZR87_RS04040 at 847.955 kb on - strand, within ABZR87_RS04040 at 848.037 kb on + strand at 848.037 kb on + strand at 848.038 kb on - strand at 848.038 kb on - strand at 848.116 kb on + strand at 848.117 kb on - strand at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.193 kb on + strand, within ABZR87_RS04045 at 848.193 kb on + strand, within ABZR87_RS04045 at 848.194 kb on - strand, within ABZR87_RS04045 at 848.257 kb on + strand, within ABZR87_RS04045 at 848.258 kb on - strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.350 kb on - strand, within ABZR87_RS04045 at 848.350 kb on - strand, within ABZR87_RS04045 at 848.400 kb on + strand, within ABZR87_RS04045 at 848.401 kb on - strand, within ABZR87_RS04045 at 848.401 kb on - strand, within ABZR87_RS04045 at 848.437 kb on - strand, within ABZR87_RS04045 at 848.574 kb on + strand, within ABZR87_RS04045 at 848.575 kb on - strand, within ABZR87_RS04045 at 848.575 kb on - strand, within ABZR87_RS04045 at 848.665 kb on + strand, within ABZR87_RS04045 at 848.666 kb on - strand, within ABZR87_RS04045 at 848.952 kb on + strand at 848.952 kb on + strand at 848.952 kb on + strand at 848.953 kb on - strand at 848.953 kb on - strand at 848.953 kb on - strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.989 kb on - strand at 848.989 kb on - strand at 848.989 kb on - strand at 848.989 kb on - strand at 849.016 kb on + strand at 849.016 kb on + strand at 849.017 kb on - strand at 849.046 kb on + strand at 849.047 kb on - strand at 849.047 kb on - strand at 849.100 kb on + strand at 849.100 kb on + strand at 849.100 kb on + strand at 849.293 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.436 kb on + strand, within ABZR87_RS04050 at 849.436 kb on + strand, within ABZR87_RS04050 at 849.437 kb on - strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.542 kb on - strand at 849.654 kb on + strand at 849.654 kb on + strand at 849.655 kb on - strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.670 kb on - strand at 849.709 kb on + strand, within ABZR87_RS04055 at 849.727 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.806 kb on - strand, within ABZR87_RS04055 at 849.806 kb on - strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.934 kb on - strand, within ABZR87_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 847,071 + ABZR87_RS04035 0.46 -1.3 847,071 + ABZR87_RS04035 0.46 +0.0 847,071 + ABZR87_RS04035 0.46 +0.1 847,071 + ABZR87_RS04035 0.46 +0.2 847,071 + ABZR87_RS04035 0.46 +0.3 847,071 + ABZR87_RS04035 0.46 +0.8 847,071 + ABZR87_RS04035 0.46 -0.3 847,072 - ABZR87_RS04035 0.46 +0.2 847,072 - ABZR87_RS04035 0.46 +0.4 847,072 - ABZR87_RS04035 0.46 +0.4 847,072 - ABZR87_RS04035 0.46 -1.8 847,072 - ABZR87_RS04035 0.46 -0.8 847,086 + ABZR87_RS04035 0.47 -0.9 847,087 - ABZR87_RS04035 0.47 +0.5 847,123 - ABZR87_RS04035 0.51 +0.7 847,123 - ABZR87_RS04035 0.51 -0.8 847,224 + ABZR87_RS04035 0.60 +1.9 847,224 + ABZR87_RS04035 0.60 -0.0 847,224 + ABZR87_RS04035 0.60 -0.5 847,224 + ABZR87_RS04035 0.60 +0.8 847,225 - ABZR87_RS04035 0.60 -0.3 847,225 - ABZR87_RS04035 0.60 +0.7 847,225 - ABZR87_RS04035 0.60 +0.5 847,233 + ABZR87_RS04035 0.61 -0.7 847,233 + ABZR87_RS04035 0.61 -0.4 847,233 + ABZR87_RS04035 0.61 +0.3 847,233 + ABZR87_RS04035 0.61 -1.3 847,234 - ABZR87_RS04035 0.61 -0.1 847,234 - ABZR87_RS04035 0.61 -0.2 847,239 + ABZR87_RS04035 0.62 +0.2 847,239 + ABZR87_RS04035 0.62 -0.9 847,239 + ABZR87_RS04035 0.62 -1.1 847,239 + ABZR87_RS04035 0.62 -0.5 847,239 + ABZR87_RS04035 0.62 +0.3 847,239 + ABZR87_RS04035 0.62 -0.6 847,239 + ABZR87_RS04035 0.62 +1.1 847,239 + ABZR87_RS04035 0.62 -0.9 847,240 - ABZR87_RS04035 0.62 -1.8 847,240 - ABZR87_RS04035 0.62 -0.1 847,240 - ABZR87_RS04035 0.62 -0.5 847,240 - ABZR87_RS04035 0.62 -0.7 847,240 - ABZR87_RS04035 0.62 -0.1 847,240 - ABZR87_RS04035 0.62 -0.8 847,240 - ABZR87_RS04035 0.62 +0.7 847,240 - ABZR87_RS04035 0.62 +0.1 847,240 - ABZR87_RS04035 0.62 -0.2 847,240 - ABZR87_RS04035 0.62 -1.6 847,240 - ABZR87_RS04035 0.62 +0.8 847,494 + ABZR87_RS04035 0.86 +0.6 847,495 - ABZR87_RS04035 0.86 +0.1 847,567 - +1.2 847,593 - -1.4 847,752 + -1.4 847,752 + -0.7 847,752 + -0.7 847,752 + +0.4 847,752 + +1.1 847,752 + +1.3 847,752 + -2.3 847,752 + -1.4 847,753 - +0.7 847,753 - -0.1 847,753 - +0.7 847,753 - -0.1 847,754 + +0.3 847,754 + +1.2 847,755 - +0.5 847,755 - +0.2 847,755 - -0.0 847,755 - -0.6 847,825 - -0.3 847,906 + ABZR87_RS04040 0.43 +1.2 847,906 + ABZR87_RS04040 0.43 -1.0 847,906 + ABZR87_RS04040 0.43 +0.6 847,906 + ABZR87_RS04040 0.43 +0.7 847,906 + ABZR87_RS04040 0.43 -0.1 847,906 + ABZR87_RS04040 0.43 +0.0 847,907 - ABZR87_RS04040 0.43 +0.0 847,907 - ABZR87_RS04040 0.43 -0.1 847,907 - ABZR87_RS04040 0.43 -0.7 847,907 - ABZR87_RS04040 0.43 -0.0 847,907 - ABZR87_RS04040 0.43 +0.2 847,954 + ABZR87_RS04040 0.66 -0.7 847,954 + ABZR87_RS04040 0.66 -0.3 847,955 - ABZR87_RS04040 0.67 -0.2 847,955 - ABZR87_RS04040 0.67 +0.9 848,037 + -0.5 848,037 + +0.2 848,038 - -0.4 848,038 - +1.2 848,116 + -0.9 848,117 - -0.1 848,185 - ABZR87_RS04045 0.16 +1.1 848,185 - ABZR87_RS04045 0.16 +0.7 848,185 - ABZR87_RS04045 0.16 +0.8 848,185 - ABZR87_RS04045 0.16 +0.2 848,193 + ABZR87_RS04045 0.17 -0.4 848,193 + ABZR87_RS04045 0.17 -1.0 848,194 - ABZR87_RS04045 0.17 +0.5 848,257 + ABZR87_RS04045 0.23 -0.4 848,258 - ABZR87_RS04045 0.23 +0.3 848,259 + ABZR87_RS04045 0.24 +1.7 848,259 + ABZR87_RS04045 0.24 -0.5 848,259 + ABZR87_RS04045 0.24 +0.2 848,260 - ABZR87_RS04045 0.24 +2.1 848,260 - ABZR87_RS04045 0.24 -0.8 848,260 - ABZR87_RS04045 0.24 -0.1 848,260 - ABZR87_RS04045 0.24 -0.1 848,260 - ABZR87_RS04045 0.24 +0.3 848,337 + ABZR87_RS04045 0.32 +0.2 848,337 + ABZR87_RS04045 0.32 -1.1 848,337 + ABZR87_RS04045 0.32 +0.7 848,338 - ABZR87_RS04045 0.32 +1.5 848,338 - ABZR87_RS04045 0.32 +0.1 848,338 - ABZR87_RS04045 0.32 -1.0 848,338 - ABZR87_RS04045 0.32 -1.4 848,338 - ABZR87_RS04045 0.32 -0.4 848,338 - ABZR87_RS04045 0.32 -0.4 848,338 - ABZR87_RS04045 0.32 +0.7 848,349 + ABZR87_RS04045 0.33 -0.3 848,349 + ABZR87_RS04045 0.33 -1.0 848,349 + ABZR87_RS04045 0.33 +0.1 848,349 + ABZR87_RS04045 0.33 +0.1 848,350 - ABZR87_RS04045 0.33 +0.2 848,350 - ABZR87_RS04045 0.33 +0.8 848,400 + ABZR87_RS04045 0.38 -0.2 848,401 - ABZR87_RS04045 0.39 +0.7 848,401 - ABZR87_RS04045 0.39 +0.7 848,437 - ABZR87_RS04045 0.42 +0.5 848,574 + ABZR87_RS04045 0.57 -0.3 848,575 - ABZR87_RS04045 0.57 +0.7 848,575 - ABZR87_RS04045 0.57 -0.3 848,665 + ABZR87_RS04045 0.66 +0.7 848,666 - ABZR87_RS04045 0.66 -0.3 848,952 + -0.0 848,952 + -0.9 848,952 + +0.0 848,953 - -0.3 848,953 - +0.8 848,953 - +1.0 848,988 + -1.5 848,988 + +1.2 848,988 + -0.3 848,988 + +0.4 848,988 + -0.6 848,989 - +1.7 848,989 - +0.0 848,989 - -0.6 848,989 - -0.8 849,016 + +0.6 849,016 + +0.2 849,017 - -2.6 849,046 + +0.1 849,047 - -0.2 849,047 - -0.1 849,100 + +0.2 849,100 + +0.7 849,100 + +0.9 849,293 + ABZR87_RS04050 0.42 +0.1 849,358 + ABZR87_RS04050 0.56 +0.4 849,358 + ABZR87_RS04050 0.56 -1.0 849,358 + ABZR87_RS04050 0.56 +0.1 849,359 - ABZR87_RS04050 0.56 -0.5 849,359 - ABZR87_RS04050 0.56 -0.2 849,359 - ABZR87_RS04050 0.56 +1.2 849,359 - ABZR87_RS04050 0.56 +0.1 849,359 - ABZR87_RS04050 0.56 -0.4 849,359 - ABZR87_RS04050 0.56 -0.4 849,359 - ABZR87_RS04050 0.56 +1.7 849,436 + ABZR87_RS04050 0.73 -0.3 849,436 + ABZR87_RS04050 0.73 +0.3 849,437 - ABZR87_RS04050 0.73 -0.5 849,451 + ABZR87_RS04050 0.76 -1.4 849,451 + ABZR87_RS04050 0.76 -0.8 849,451 + ABZR87_RS04050 0.76 +0.5 849,451 + ABZR87_RS04050 0.76 +0.1 849,452 - ABZR87_RS04050 0.76 +0.2 849,452 - ABZR87_RS04050 0.76 +1.9 849,452 - ABZR87_RS04050 0.76 +1.3 849,452 - ABZR87_RS04050 0.76 -1.7 849,452 - ABZR87_RS04050 0.76 -0.3 849,452 - ABZR87_RS04050 0.76 -0.1 849,452 - ABZR87_RS04050 0.76 -1.0 849,541 + +0.7 849,541 + +0.4 849,541 + -0.3 849,541 + -1.1 849,541 + +0.4 849,542 - +0.8 849,654 + -0.2 849,654 + +0.7 849,655 - -0.6 849,669 + -0.1 849,669 + -0.1 849,669 + -0.6 849,669 + -0.7 849,670 - -1.4 849,709 + ABZR87_RS04055 0.11 -1.3 849,727 + ABZR87_RS04055 0.13 +0.4 849,805 + ABZR87_RS04055 0.20 -0.9 849,805 + ABZR87_RS04055 0.20 +0.9 849,805 + ABZR87_RS04055 0.20 +0.5 849,805 + ABZR87_RS04055 0.20 +0.4 849,806 - ABZR87_RS04055 0.20 +1.3 849,806 - ABZR87_RS04055 0.20 +0.5 849,909 + ABZR87_RS04055 0.29 +0.9 849,909 + ABZR87_RS04055 0.29 +0.7 849,909 + ABZR87_RS04055 0.29 -0.5 849,909 + ABZR87_RS04055 0.29 -0.8 849,909 + ABZR87_RS04055 0.29 +0.2 849,909 + ABZR87_RS04055 0.29 +0.7 849,909 + ABZR87_RS04055 0.29 +0.3 849,909 + ABZR87_RS04055 0.29 +0.5 849,909 + ABZR87_RS04055 0.29 -0.3 849,910 - ABZR87_RS04055 0.29 +0.0 849,910 - ABZR87_RS04055 0.29 +0.2 849,910 - ABZR87_RS04055 0.29 -0.3 849,910 - ABZR87_RS04055 0.29 -0.5 849,910 - ABZR87_RS04055 0.29 -1.5 849,910 - ABZR87_RS04055 0.29 +0.9 849,933 + ABZR87_RS04055 0.31 -0.3 849,933 + ABZR87_RS04055 0.31 +2.7 849,933 + ABZR87_RS04055 0.31 -0.3 849,933 + ABZR87_RS04055 0.31 -1.0 849,934 - ABZR87_RS04055 0.31 +0.6
Or see this region's nucleotide sequence