Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03660 and ABZR87_RS03665 are separated by 279 nucleotides ABZR87_RS03665 and ABZR87_RS03670 are separated by 141 nucleotides ABZR87_RS03670 and ABZR87_RS03675 are separated by 76 nucleotides
ABZR87_RS03660: ABZR87_RS03660 - PhzF family phenazine biosynthesis protein, at 764,205 to 765,119
_RS03660
ABZR87_RS03665: ABZR87_RS03665 - MarR family transcriptional regulator, at 765,399 to 765,860
_RS03665
ABZR87_RS03670: ABZR87_RS03670 - organic hydroperoxide resistance protein, at 766,002 to 766,427
_RS03670
ABZR87_RS03675: ABZR87_RS03675 - alpha/beta hydrolase, at 766,504 to 767,523
_RS03675
Position (kb) 765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.444 kb on + strand, within ABZR87_RS03660 at 764.445 kb on - strand, within ABZR87_RS03660 at 764.445 kb on - strand, within ABZR87_RS03660 at 764.506 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.512 kb on + strand, within ABZR87_RS03660 at 764.551 kb on + strand, within ABZR87_RS03660 at 764.551 kb on + strand, within ABZR87_RS03660 at 764.568 kb on + strand, within ABZR87_RS03660 at 764.619 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.924 kb on + strand, within ABZR87_RS03660 at 764.925 kb on - strand, within ABZR87_RS03660 at 764.928 kb on + strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.929 kb on - strand, within ABZR87_RS03660 at 764.990 kb on - strand, within ABZR87_RS03660 at 765.106 kb on + strand at 765.106 kb on + strand at 765.107 kb on - strand at 765.107 kb on - strand at 765.107 kb on - strand at 765.131 kb on + strand at 765.131 kb on + strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.132 kb on - strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.181 kb on + strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.182 kb on - strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.196 kb on + strand at 765.250 kb on + strand at 765.251 kb on - strand at 765.292 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.293 kb on + strand at 765.294 kb on - strand at 765.294 kb on - strand at 765.294 kb on - strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.298 kb on + strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.299 kb on - strand at 765.384 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.386 kb on + strand at 765.468 kb on + strand, within ABZR87_RS03665 at 765.468 kb on + strand, within ABZR87_RS03665 at 765.469 kb on - strand, within ABZR87_RS03665 at 765.498 kb on + strand, within ABZR87_RS03665 at 765.531 kb on + strand, within ABZR87_RS03665 at 765.531 kb on + strand, within ABZR87_RS03665 at 765.532 kb on - strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.540 kb on + strand, within ABZR87_RS03665 at 765.541 kb on - strand, within ABZR87_RS03665 at 765.541 kb on - strand, within ABZR87_RS03665 at 765.870 kb on + strand at 765.870 kb on + strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.906 kb on - strand at 766.023 kb on + strand at 766.023 kb on + strand at 766.024 kb on - strand at 766.170 kb on + strand, within ABZR87_RS03670 at 766.171 kb on - strand, within ABZR87_RS03670 at 766.377 kb on + strand, within ABZR87_RS03670 at 766.378 kb on - strand, within ABZR87_RS03670 at 766.408 kb on + strand at 766.408 kb on + strand at 766.409 kb on - strand at 766.409 kb on - strand at 766.409 kb on - strand at 766.432 kb on + strand at 766.433 kb on - strand at 766.491 kb on + strand at 766.815 kb on + strand, within ABZR87_RS03675 at 766.815 kb on + strand, within ABZR87_RS03675 at 766.816 kb on - strand, within ABZR87_RS03675 at 766.816 kb on - strand, within ABZR87_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 764,444 + ABZR87_RS03660 0.26 -0.3 764,444 + ABZR87_RS03660 0.26 -2.2 764,444 + ABZR87_RS03660 0.26 +0.9 764,445 - ABZR87_RS03660 0.26 -0.4 764,445 - ABZR87_RS03660 0.26 -2.6 764,506 + ABZR87_RS03660 0.33 -1.0 764,512 + ABZR87_RS03660 0.34 -1.2 764,512 + ABZR87_RS03660 0.34 -0.8 764,512 + ABZR87_RS03660 0.34 +0.7 764,551 + ABZR87_RS03660 0.38 +1.2 764,551 + ABZR87_RS03660 0.38 +0.2 764,568 + ABZR87_RS03660 0.40 -0.0 764,619 + ABZR87_RS03660 0.45 +0.5 764,924 + ABZR87_RS03660 0.79 -0.1 764,924 + ABZR87_RS03660 0.79 -0.5 764,924 + ABZR87_RS03660 0.79 -0.9 764,924 + ABZR87_RS03660 0.79 -0.2 764,924 + ABZR87_RS03660 0.79 +0.4 764,924 + ABZR87_RS03660 0.79 -0.1 764,925 - ABZR87_RS03660 0.79 -0.0 764,928 + ABZR87_RS03660 0.79 -1.5 764,929 - ABZR87_RS03660 0.79 +0.7 764,929 - ABZR87_RS03660 0.79 +1.3 764,929 - ABZR87_RS03660 0.79 +0.0 764,990 - ABZR87_RS03660 0.86 -0.3 765,106 + -0.5 765,106 + -0.6 765,107 - -0.3 765,107 - +0.6 765,107 - -0.5 765,131 + +1.1 765,131 + -0.1 765,132 - -0.4 765,132 - -0.1 765,132 - -0.8 765,132 - +0.8 765,181 + +0.3 765,181 + +0.2 765,181 + +0.3 765,181 + +1.0 765,182 - +0.6 765,182 - -1.2 765,182 - -0.0 765,182 - +1.0 765,182 - -0.5 765,182 - +0.1 765,182 - +0.3 765,196 + +1.3 765,196 + -0.1 765,196 + -0.9 765,196 + +1.4 765,250 + +0.4 765,251 - +1.7 765,292 + +0.5 765,293 + -0.7 765,293 + -0.2 765,293 + -0.5 765,293 + +0.2 765,294 - -1.0 765,294 - +0.2 765,294 - +0.3 765,298 + +1.7 765,298 + -0.7 765,298 + +0.2 765,298 + -0.6 765,298 + -1.7 765,299 - -0.5 765,299 - +0.5 765,299 - +0.1 765,299 - +1.7 765,384 + -0.1 765,386 + +0.9 765,386 + -1.6 765,386 + -1.3 765,386 + -1.5 765,468 + ABZR87_RS03665 0.15 -0.9 765,468 + ABZR87_RS03665 0.15 +0.4 765,469 - ABZR87_RS03665 0.15 -0.2 765,498 + ABZR87_RS03665 0.21 -2.0 765,531 + ABZR87_RS03665 0.29 -2.1 765,531 + ABZR87_RS03665 0.29 -1.7 765,532 - ABZR87_RS03665 0.29 -0.0 765,540 + ABZR87_RS03665 0.31 -0.5 765,540 + ABZR87_RS03665 0.31 +0.2 765,540 + ABZR87_RS03665 0.31 -1.3 765,540 + ABZR87_RS03665 0.31 -1.0 765,541 - ABZR87_RS03665 0.31 -1.3 765,541 - ABZR87_RS03665 0.31 -2.1 765,870 + +0.2 765,870 + -0.1 765,871 - -0.6 765,871 - +0.7 765,906 - +0.2 766,023 + -0.6 766,023 + -1.1 766,024 - -0.1 766,170 + ABZR87_RS03670 0.39 -0.4 766,171 - ABZR87_RS03670 0.40 -0.6 766,377 + ABZR87_RS03670 0.88 -1.5 766,378 - ABZR87_RS03670 0.88 -0.2 766,408 + -0.5 766,408 + -1.2 766,409 - +0.4 766,409 - +0.2 766,409 - +1.5 766,432 + +0.4 766,433 - +0.1 766,491 + +0.3 766,815 + ABZR87_RS03675 0.30 -1.5 766,815 + ABZR87_RS03675 0.30 -0.3 766,816 - ABZR87_RS03675 0.31 +0.5 766,816 - ABZR87_RS03675 0.31 -0.8
Or see this region's nucleotide sequence