Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03490 and ABZR87_RS03495 are separated by 75 nucleotides ABZR87_RS03495 and ABZR87_RS03500 are separated by 147 nucleotides
ABZR87_RS03490: ABZR87_RS03490 - indolepyruvate ferredoxin oxidoreductase family protein, at 729,284 to 732,844
_RS03490
ABZR87_RS03495: ABZR87_RS03495 - exodeoxyribonuclease I, at 732,920 to 734,359
_RS03495
ABZR87_RS03500: ABZR87_RS03500 - alcohol dehydrogenase AdhP, at 734,507 to 735,529
_RS03500
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 732.218 kb on + strand, within ABZR87_RS03490 at 732.219 kb on - strand, within ABZR87_RS03490 at 732.233 kb on + strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.234 kb on - strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.356 kb on + strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.357 kb on - strand, within ABZR87_RS03490 at 732.368 kb on + strand, within ABZR87_RS03490 at 732.369 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.387 kb on - strand, within ABZR87_RS03490 at 732.449 kb on + strand, within ABZR87_RS03490 at 732.648 kb on - strand at 732.798 kb on + strand at 732.798 kb on + strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.799 kb on - strand at 732.945 kb on + strand at 732.946 kb on - strand at 732.951 kb on + strand at 732.952 kb on - strand at 732.952 kb on - strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.050 kb on + strand at 733.104 kb on + strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.105 kb on - strand, within ABZR87_RS03495 at 733.317 kb on + strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.318 kb on - strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.668 kb on + strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 733.669 kb on - strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.065 kb on + strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.066 kb on - strand, within ABZR87_RS03495 at 734.067 kb on + strand, within ABZR87_RS03495 at 734.067 kb on + strand, within ABZR87_RS03495 at 734.068 kb on - strand, within ABZR87_RS03495 at 734.325 kb on + strand at 734.400 kb on + strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.401 kb on - strand at 734.430 kb on + strand at 734.430 kb on + strand at 734.431 kb on - strand at 734.431 kb on - strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.481 kb on + strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.482 kb on - strand at 734.532 kb on + strand at 734.635 kb on + strand, within ABZR87_RS03500 at 734.635 kb on + strand, within ABZR87_RS03500 at 734.635 kb on + strand, within ABZR87_RS03500 at 734.636 kb on - strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.714 kb on + strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.715 kb on - strand, within ABZR87_RS03500 at 734.740 kb on - strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.783 kb on + strand, within ABZR87_RS03500 at 734.784 kb on - strand, within ABZR87_RS03500 at 734.784 kb on - strand, within ABZR87_RS03500 at 734.837 kb on + strand, within ABZR87_RS03500 at 734.837 kb on + strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.838 kb on - strand, within ABZR87_RS03500 at 734.859 kb on - strand, within ABZR87_RS03500 at 734.859 kb on - strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.885 kb on + strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.886 kb on - strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.889 kb on + strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.890 kb on - strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.906 kb on + strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.907 kb on - strand, within ABZR87_RS03500 at 734.970 kb on + strand, within ABZR87_RS03500 at 734.970 kb on + strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.971 kb on - strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.978 kb on + strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 734.979 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.066 kb on - strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.210 kb on + strand, within ABZR87_RS03500 at 735.211 kb on - strand, within ABZR87_RS03500 at 735.211 kb on - strand, within ABZR87_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 732,218 + ABZR87_RS03490 0.82 -0.4 732,219 - ABZR87_RS03490 0.82 -2.0 732,233 + ABZR87_RS03490 0.83 +1.3 732,234 - ABZR87_RS03490 0.83 +2.5 732,234 - ABZR87_RS03490 0.83 +1.1 732,234 - ABZR87_RS03490 0.83 +1.2 732,356 + ABZR87_RS03490 0.86 -0.4 732,356 + ABZR87_RS03490 0.86 +0.5 732,356 + ABZR87_RS03490 0.86 +0.1 732,356 + ABZR87_RS03490 0.86 -0.7 732,356 + ABZR87_RS03490 0.86 +0.7 732,357 - ABZR87_RS03490 0.86 +0.8 732,357 - ABZR87_RS03490 0.86 -0.9 732,357 - ABZR87_RS03490 0.86 +0.1 732,357 - ABZR87_RS03490 0.86 -0.7 732,357 - ABZR87_RS03490 0.86 +0.7 732,357 - ABZR87_RS03490 0.86 +0.5 732,357 - ABZR87_RS03490 0.86 +0.9 732,368 + ABZR87_RS03490 0.87 +0.9 732,369 - ABZR87_RS03490 0.87 -0.6 732,387 - ABZR87_RS03490 0.87 -0.2 732,387 - ABZR87_RS03490 0.87 +1.3 732,387 - ABZR87_RS03490 0.87 -0.1 732,449 + ABZR87_RS03490 0.89 +0.8 732,648 - -1.0 732,798 + -0.4 732,798 + +1.1 732,799 - +1.7 732,799 - +0.5 732,799 - +0.5 732,799 - +0.6 732,799 - +0.9 732,799 - +0.5 732,799 - -1.7 732,799 - +1.1 732,799 - -2.3 732,945 + -0.5 732,946 - +0.3 732,951 + -1.1 732,952 - -0.1 732,952 - +0.1 733,050 + -0.4 733,050 + +0.3 733,050 + +0.7 733,050 + +0.4 733,050 + -0.3 733,050 + -0.4 733,050 + +0.2 733,104 + ABZR87_RS03495 0.13 +0.9 733,105 - ABZR87_RS03495 0.13 -0.2 733,105 - ABZR87_RS03495 0.13 -1.5 733,105 - ABZR87_RS03495 0.13 -1.1 733,105 - ABZR87_RS03495 0.13 -0.7 733,105 - ABZR87_RS03495 0.13 +0.5 733,105 - ABZR87_RS03495 0.13 -0.8 733,317 + ABZR87_RS03495 0.28 +0.7 733,318 - ABZR87_RS03495 0.28 -0.4 733,318 - ABZR87_RS03495 0.28 +0.5 733,318 - ABZR87_RS03495 0.28 +0.5 733,668 + ABZR87_RS03495 0.52 +1.0 733,668 + ABZR87_RS03495 0.52 +0.7 733,668 + ABZR87_RS03495 0.52 +0.5 733,668 + ABZR87_RS03495 0.52 +0.2 733,669 - ABZR87_RS03495 0.52 -0.1 733,669 - ABZR87_RS03495 0.52 -1.0 733,669 - ABZR87_RS03495 0.52 +0.3 733,669 - ABZR87_RS03495 0.52 -0.2 733,669 - ABZR87_RS03495 0.52 -0.8 734,065 + ABZR87_RS03495 0.80 -1.3 734,065 + ABZR87_RS03495 0.80 +0.0 734,065 + ABZR87_RS03495 0.80 -1.5 734,065 + ABZR87_RS03495 0.80 -0.6 734,065 + ABZR87_RS03495 0.80 -0.9 734,065 + ABZR87_RS03495 0.80 -1.0 734,065 + ABZR87_RS03495 0.80 -0.7 734,065 + ABZR87_RS03495 0.80 -0.2 734,065 + ABZR87_RS03495 0.80 +0.2 734,065 + ABZR87_RS03495 0.80 +0.6 734,066 - ABZR87_RS03495 0.80 -0.9 734,066 - ABZR87_RS03495 0.80 +0.6 734,066 - ABZR87_RS03495 0.80 -2.0 734,066 - ABZR87_RS03495 0.80 -0.7 734,066 - ABZR87_RS03495 0.80 -1.2 734,066 - ABZR87_RS03495 0.80 -0.3 734,067 + ABZR87_RS03495 0.80 -0.2 734,067 + ABZR87_RS03495 0.80 -0.9 734,068 - ABZR87_RS03495 0.80 +0.5 734,325 + -0.3 734,400 + +0.4 734,401 - -0.8 734,401 - -0.3 734,401 - -1.3 734,430 + -2.6 734,430 + +0.5 734,431 - -0.0 734,431 - -1.0 734,481 + +0.3 734,481 + +0.3 734,481 + +0.5 734,481 + +1.1 734,481 + -0.4 734,482 - +2.2 734,482 - +0.7 734,482 - -0.2 734,482 - -0.1 734,482 - -0.3 734,482 - +0.4 734,482 - -1.2 734,482 - +0.2 734,482 - -1.0 734,532 + +1.7 734,635 + ABZR87_RS03500 0.13 +0.2 734,635 + ABZR87_RS03500 0.13 +0.3 734,635 + ABZR87_RS03500 0.13 -1.8 734,636 - ABZR87_RS03500 0.13 -0.4 734,714 + ABZR87_RS03500 0.20 -1.6 734,714 + ABZR87_RS03500 0.20 +2.0 734,714 + ABZR87_RS03500 0.20 -0.2 734,714 + ABZR87_RS03500 0.20 +0.3 734,714 + ABZR87_RS03500 0.20 +0.2 734,714 + ABZR87_RS03500 0.20 +1.7 734,714 + ABZR87_RS03500 0.20 -0.8 734,714 + ABZR87_RS03500 0.20 -0.1 734,715 - ABZR87_RS03500 0.20 -0.4 734,715 - ABZR87_RS03500 0.20 -1.3 734,715 - ABZR87_RS03500 0.20 +0.4 734,715 - ABZR87_RS03500 0.20 -0.7 734,715 - ABZR87_RS03500 0.20 +1.1 734,715 - ABZR87_RS03500 0.20 +0.3 734,740 - ABZR87_RS03500 0.23 -1.1 734,783 + ABZR87_RS03500 0.27 +0.2 734,783 + ABZR87_RS03500 0.27 -1.5 734,783 + ABZR87_RS03500 0.27 -0.8 734,783 + ABZR87_RS03500 0.27 +0.4 734,783 + ABZR87_RS03500 0.27 -1.7 734,783 + ABZR87_RS03500 0.27 +0.6 734,783 + ABZR87_RS03500 0.27 -0.1 734,784 - ABZR87_RS03500 0.27 +1.3 734,784 - ABZR87_RS03500 0.27 -0.3 734,837 + ABZR87_RS03500 0.32 +0.5 734,837 + ABZR87_RS03500 0.32 -0.0 734,838 - ABZR87_RS03500 0.32 +0.3 734,838 - ABZR87_RS03500 0.32 -1.1 734,838 - ABZR87_RS03500 0.32 -0.0 734,859 - ABZR87_RS03500 0.34 -1.6 734,859 - ABZR87_RS03500 0.34 -0.4 734,885 + ABZR87_RS03500 0.37 -0.1 734,885 + ABZR87_RS03500 0.37 -0.3 734,885 + ABZR87_RS03500 0.37 -0.2 734,885 + ABZR87_RS03500 0.37 -0.7 734,885 + ABZR87_RS03500 0.37 -1.1 734,885 + ABZR87_RS03500 0.37 +0.4 734,885 + ABZR87_RS03500 0.37 -0.6 734,885 + ABZR87_RS03500 0.37 -0.8 734,885 + ABZR87_RS03500 0.37 -0.2 734,885 + ABZR87_RS03500 0.37 -1.9 734,885 + ABZR87_RS03500 0.37 +0.2 734,885 + ABZR87_RS03500 0.37 -0.7 734,886 - ABZR87_RS03500 0.37 -0.9 734,886 - ABZR87_RS03500 0.37 -1.3 734,886 - ABZR87_RS03500 0.37 -0.7 734,886 - ABZR87_RS03500 0.37 -0.2 734,889 + ABZR87_RS03500 0.37 -0.2 734,889 + ABZR87_RS03500 0.37 -0.2 734,889 + ABZR87_RS03500 0.37 +0.3 734,889 + ABZR87_RS03500 0.37 +0.8 734,890 - ABZR87_RS03500 0.37 +0.4 734,890 - ABZR87_RS03500 0.37 +0.4 734,890 - ABZR87_RS03500 0.37 +0.5 734,890 - ABZR87_RS03500 0.37 -0.8 734,906 + ABZR87_RS03500 0.39 -0.8 734,906 + ABZR87_RS03500 0.39 +0.7 734,906 + ABZR87_RS03500 0.39 -1.0 734,906 + ABZR87_RS03500 0.39 -0.8 734,906 + ABZR87_RS03500 0.39 -0.7 734,906 + ABZR87_RS03500 0.39 -0.4 734,907 - ABZR87_RS03500 0.39 -1.2 734,907 - ABZR87_RS03500 0.39 -0.0 734,907 - ABZR87_RS03500 0.39 -1.0 734,907 - ABZR87_RS03500 0.39 -0.8 734,970 + ABZR87_RS03500 0.45 -0.0 734,970 + ABZR87_RS03500 0.45 +0.4 734,971 - ABZR87_RS03500 0.45 +1.2 734,971 - ABZR87_RS03500 0.45 +0.8 734,971 - ABZR87_RS03500 0.45 -0.5 734,971 - ABZR87_RS03500 0.45 +0.1 734,971 - ABZR87_RS03500 0.45 +0.6 734,978 + ABZR87_RS03500 0.46 +0.7 734,978 + ABZR87_RS03500 0.46 -1.4 734,978 + ABZR87_RS03500 0.46 -0.2 734,979 - ABZR87_RS03500 0.46 +0.2 734,979 - ABZR87_RS03500 0.46 +0.0 734,979 - ABZR87_RS03500 0.46 -0.0 734,979 - ABZR87_RS03500 0.46 +0.4 735,066 - ABZR87_RS03500 0.55 -0.8 735,066 - ABZR87_RS03500 0.55 -0.6 735,066 - ABZR87_RS03500 0.55 -0.2 735,210 + ABZR87_RS03500 0.69 -1.0 735,210 + ABZR87_RS03500 0.69 -0.6 735,210 + ABZR87_RS03500 0.69 +0.5 735,210 + ABZR87_RS03500 0.69 +0.7 735,210 + ABZR87_RS03500 0.69 +0.6 735,211 - ABZR87_RS03500 0.69 -0.9 735,211 - ABZR87_RS03500 0.69 +0.0
Or see this region's nucleotide sequence