Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02600

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02590 and ABZR87_RS02595 overlap by 4 nucleotidesABZR87_RS02595 and ABZR87_RS02600 are separated by 138 nucleotidesABZR87_RS02600 and ABZR87_RS02605 are separated by 2 nucleotidesABZR87_RS02605 and ABZR87_RS02610 overlap by 4 nucleotides ABZR87_RS02590: ABZR87_RS02590 - 3-dehydroquinate synthase, at 550,794 to 551,900 _RS02590 ABZR87_RS02595: ABZR87_RS02595 - shikimate kinase, at 551,897 to 552,469 _RS02595 ABZR87_RS02600: ABZR87_RS02600 - temperature dependent type IV pilus secretin PilQ, at 552,608 to 554,764 _RS02600 ABZR87_RS02605: ABZR87_RS02605 - pilus assembly protein PilP, at 554,767 to 555,312 _RS02605 ABZR87_RS02610: ABZR87_RS02610 - type 4a pilus biogenesis protein PilO, at 555,309 to 555,968 _RS02610 Position (kb) 552 553 554 555Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.755 kb on + strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.756 kb on - strand, within ABZR87_RS02590at 551.852 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.894 kb on + strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.895 kb on - strandat 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.983 kb on + strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.984 kb on - strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.986 kb on + strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 551.987 kb on - strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.045 kb on + strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.142 kb on - strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.168 kb on + strand, within ABZR87_RS02595at 552.169 kb on - strand, within ABZR87_RS02595at 552.503 kb on + strandat 552.503 kb on + strandat 552.504 kb on - strandat 552.504 kb on - strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.768 kb on + strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.769 kb on - strandat 552.772 kb on + strandat 552.773 kb on - strandat 552.773 kb on - strandat 552.862 kb on + strand, within ABZR87_RS02600at 552.863 kb on - strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.866 kb on + strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.867 kb on - strand, within ABZR87_RS02600at 552.996 kb on + strand, within ABZR87_RS02600at 553.009 kb on + strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.010 kb on - strand, within ABZR87_RS02600at 553.064 kb on + strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.065 kb on - strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on + strand, within ABZR87_RS02600at 553.254 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.255 kb on - strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.258 kb on + strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.259 kb on - strand, within ABZR87_RS02600at 553.450 kb on + strand, within ABZR87_RS02600at 553.451 kb on - strand, within ABZR87_RS02600at 553.456 kb on + strand, within ABZR87_RS02600at 553.457 kb on - strand, within ABZR87_RS02600at 553.502 kb on - strand, within ABZR87_RS02600at 553.578 kb on + strand, within ABZR87_RS02600at 553.578 kb on + strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.579 kb on - strand, within ABZR87_RS02600at 553.601 kb on - strand, within ABZR87_RS02600at 553.977 kb on + strand, within ABZR87_RS02600at 553.978 kb on - strand, within ABZR87_RS02600at 553.986 kb on + strand, within ABZR87_RS02600at 554.085 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.337 kb on + strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.338 kb on - strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.364 kb on + strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.365 kb on - strand, within ABZR87_RS02600at 554.402 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.452 kb on - strand, within ABZR87_RS02600at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.885 kb on + strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.886 kb on - strand, within ABZR87_RS02605at 554.900 kb on + strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 554.901 kb on - strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.005 kb on + strand, within ABZR87_RS02605at 555.006 kb on - strand, within ABZR87_RS02605at 555.116 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.131 kb on + strand, within ABZR87_RS02605at 555.165 kb on + strand, within ABZR87_RS02605at 555.166 kb on - strand, within ABZR87_RS02605at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.544 kb on + strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.545 kb on - strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.547 kb on + strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.548 kb on - strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.729 kb on + strand, within ABZR87_RS02610at 555.730 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610at 555.752 kb on - strand, within ABZR87_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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551,755 + ABZR87_RS02590 0.87 +0.0
551,755 + ABZR87_RS02590 0.87 -0.5
551,755 + ABZR87_RS02590 0.87 +0.5
551,755 + ABZR87_RS02590 0.87 +1.1
551,755 + ABZR87_RS02590 0.87 +1.9
551,755 + ABZR87_RS02590 0.87 +0.3
551,755 + ABZR87_RS02590 0.87 -0.5
551,756 - ABZR87_RS02590 0.87 -0.9
551,756 - ABZR87_RS02590 0.87 -1.5
551,756 - ABZR87_RS02590 0.87 -0.8
551,756 - ABZR87_RS02590 0.87 -0.2
551,756 - ABZR87_RS02590 0.87 -1.0
551,756 - ABZR87_RS02590 0.87 -1.2
551,756 - ABZR87_RS02590 0.87 -0.7
551,852 + +0.3
551,894 + +0.1
551,894 + +0.1
551,894 + +0.5
551,895 - -1.9
551,895 - -0.6
551,895 - +0.4
551,983 + ABZR87_RS02595 0.15 +2.7
551,983 + ABZR87_RS02595 0.15 +0.1
551,983 + ABZR87_RS02595 0.15 -0.0
551,984 - ABZR87_RS02595 0.15 +1.2
551,984 - ABZR87_RS02595 0.15 -0.7
551,984 - ABZR87_RS02595 0.15 -2.0
551,984 - ABZR87_RS02595 0.15 -0.9
551,986 + ABZR87_RS02595 0.16 -1.0
551,986 + ABZR87_RS02595 0.16 +1.7
551,986 + ABZR87_RS02595 0.16 +0.5
551,986 + ABZR87_RS02595 0.16 -0.1
551,986 + ABZR87_RS02595 0.16 -0.7
551,986 + ABZR87_RS02595 0.16 -0.9
551,987 - ABZR87_RS02595 0.16 -0.9
551,987 - ABZR87_RS02595 0.16 -0.7
551,987 - ABZR87_RS02595 0.16 +0.5
551,987 - ABZR87_RS02595 0.16 +1.2
551,987 - ABZR87_RS02595 0.16 -1.0
551,987 - ABZR87_RS02595 0.16 +0.7
552,045 + ABZR87_RS02595 0.26 -0.5
552,045 + ABZR87_RS02595 0.26 +0.8
552,045 + ABZR87_RS02595 0.26 -0.0
552,142 - ABZR87_RS02595 0.43 +0.1
552,142 - ABZR87_RS02595 0.43 +0.2
552,142 - ABZR87_RS02595 0.43 +0.3
552,142 - ABZR87_RS02595 0.43 +0.2
552,142 - ABZR87_RS02595 0.43 +0.7
552,168 + ABZR87_RS02595 0.47 +0.6
552,168 + ABZR87_RS02595 0.47 -0.2
552,168 + ABZR87_RS02595 0.47 +0.2
552,168 + ABZR87_RS02595 0.47 -0.4
552,168 + ABZR87_RS02595 0.47 -0.2
552,169 - ABZR87_RS02595 0.47 -0.4
552,503 + +0.5
552,503 + +1.6
552,504 - +1.4
552,504 - +0.8
552,768 + +6.4
552,768 + +6.8
552,768 + +5.7
552,769 - +4.9
552,769 - +6.0
552,769 - +6.4
552,772 + +6.8
552,773 - +6.1
552,773 - +7.0
552,862 + ABZR87_RS02600 0.12 +6.4
552,863 - ABZR87_RS02600 0.12 +6.0
552,866 + ABZR87_RS02600 0.12 +6.1
552,866 + ABZR87_RS02600 0.12 +6.0
552,866 + ABZR87_RS02600 0.12 +6.2
552,866 + ABZR87_RS02600 0.12 +6.2
552,866 + ABZR87_RS02600 0.12 +6.0
552,866 + ABZR87_RS02600 0.12 +7.0
552,866 + ABZR87_RS02600 0.12 +6.0
552,866 + ABZR87_RS02600 0.12 +6.1
552,866 + ABZR87_RS02600 0.12 +6.0
552,866 + ABZR87_RS02600 0.12 +6.9
552,867 - ABZR87_RS02600 0.12 +5.6
552,867 - ABZR87_RS02600 0.12 +6.0
552,867 - ABZR87_RS02600 0.12 +6.2
552,867 - ABZR87_RS02600 0.12 +5.8
552,867 - ABZR87_RS02600 0.12 +6.2
552,867 - ABZR87_RS02600 0.12 +5.6
552,867 - ABZR87_RS02600 0.12 +5.6
552,867 - ABZR87_RS02600 0.12 +6.7
552,867 - ABZR87_RS02600 0.12 +6.5
552,996 + ABZR87_RS02600 0.18 +6.0
553,009 + ABZR87_RS02600 0.19 +5.7
553,010 - ABZR87_RS02600 0.19 +6.3
553,010 - ABZR87_RS02600 0.19 +6.3
553,064 + ABZR87_RS02600 0.21 +5.9
553,065 - ABZR87_RS02600 0.21 +7.3
553,065 - ABZR87_RS02600 0.21 +7.0
553,065 - ABZR87_RS02600 0.21 +6.0
553,254 + ABZR87_RS02600 0.30 +5.8
553,254 + ABZR87_RS02600 0.30 +6.1
553,254 + ABZR87_RS02600 0.30 +6.5
553,254 + ABZR87_RS02600 0.30 +6.4
553,254 - ABZR87_RS02600 0.30 +6.3
553,255 - ABZR87_RS02600 0.30 +5.9
553,255 - ABZR87_RS02600 0.30 +6.0
553,258 + ABZR87_RS02600 0.30 +6.7
553,258 + ABZR87_RS02600 0.30 +6.4
553,259 - ABZR87_RS02600 0.30 +6.2
553,259 - ABZR87_RS02600 0.30 +5.6
553,259 - ABZR87_RS02600 0.30 +5.0
553,259 - ABZR87_RS02600 0.30 +5.7
553,259 - ABZR87_RS02600 0.30 +6.1
553,450 + ABZR87_RS02600 0.39 +6.6
553,451 - ABZR87_RS02600 0.39 +6.1
553,456 + ABZR87_RS02600 0.39 +6.0
553,457 - ABZR87_RS02600 0.39 +6.6
553,502 - ABZR87_RS02600 0.41 +6.2
553,578 + ABZR87_RS02600 0.45 +6.2
553,578 + ABZR87_RS02600 0.45 +5.1
553,579 - ABZR87_RS02600 0.45 +6.4
553,579 - ABZR87_RS02600 0.45 +5.7
553,579 - ABZR87_RS02600 0.45 +6.7
553,579 - ABZR87_RS02600 0.45 +6.4
553,601 - ABZR87_RS02600 0.46 +6.3
553,977 + ABZR87_RS02600 0.63 +5.7
553,978 - ABZR87_RS02600 0.64 +6.1
553,986 + ABZR87_RS02600 0.64 +5.9
554,085 + ABZR87_RS02600 0.68 +6.8
554,337 + ABZR87_RS02600 0.80 +7.3
554,337 + ABZR87_RS02600 0.80 +6.5
554,337 + ABZR87_RS02600 0.80 +6.6
554,338 - ABZR87_RS02600 0.80 +6.1
554,338 - ABZR87_RS02600 0.80 +6.1
554,338 - ABZR87_RS02600 0.80 +5.7
554,338 - ABZR87_RS02600 0.80 +5.7
554,338 - ABZR87_RS02600 0.80 +5.9
554,364 + ABZR87_RS02600 0.81 +5.9
554,364 + ABZR87_RS02600 0.81 +8.3
554,364 + ABZR87_RS02600 0.81 +6.4
554,365 - ABZR87_RS02600 0.81 +5.2
554,365 - ABZR87_RS02600 0.81 +6.1
554,365 - ABZR87_RS02600 0.81 +5.6
554,365 - ABZR87_RS02600 0.81 +6.6
554,365 - ABZR87_RS02600 0.81 +6.3
554,365 - ABZR87_RS02600 0.81 +5.9
554,402 - ABZR87_RS02600 0.83 +5.8
554,452 - ABZR87_RS02600 0.85 +6.6
554,452 - ABZR87_RS02600 0.85 +6.4
554,452 - ABZR87_RS02600 0.85 +6.4
554,885 + ABZR87_RS02605 0.22 +5.2
554,885 + ABZR87_RS02605 0.22 +6.0
554,885 + ABZR87_RS02605 0.22 +5.8
554,886 - ABZR87_RS02605 0.22 +6.4
554,886 - ABZR87_RS02605 0.22 +6.1
554,900 + ABZR87_RS02605 0.24 +6.7
554,901 - ABZR87_RS02605 0.25 +5.6
554,901 - ABZR87_RS02605 0.25 +5.9
554,901 - ABZR87_RS02605 0.25 +5.8
554,901 - ABZR87_RS02605 0.25 +5.3
554,901 - ABZR87_RS02605 0.25 +6.5
555,005 + ABZR87_RS02605 0.44 +6.0
555,005 + ABZR87_RS02605 0.44 +6.3
555,006 - ABZR87_RS02605 0.44 +6.2
555,116 + ABZR87_RS02605 0.64 +6.0
555,131 + ABZR87_RS02605 0.67 +5.7
555,131 + ABZR87_RS02605 0.67 +5.8
555,165 + ABZR87_RS02605 0.73 +6.1
555,166 - ABZR87_RS02605 0.73 +5.9
555,544 + ABZR87_RS02610 0.36 +6.3
555,544 + ABZR87_RS02610 0.36 +5.9
555,544 + ABZR87_RS02610 0.36 +6.0
555,544 + ABZR87_RS02610 0.36 +5.4
555,545 - ABZR87_RS02610 0.36 +2.7
555,545 - ABZR87_RS02610 0.36 +6.0
555,545 - ABZR87_RS02610 0.36 +5.9
555,545 - ABZR87_RS02610 0.36 +5.9
555,545 - ABZR87_RS02610 0.36 +6.1
555,547 + ABZR87_RS02610 0.36 +6.0
555,547 + ABZR87_RS02610 0.36 +5.5
555,547 + ABZR87_RS02610 0.36 +5.4
555,547 + ABZR87_RS02610 0.36 +6.2
555,547 + ABZR87_RS02610 0.36 +5.8
555,547 + ABZR87_RS02610 0.36 +6.6
555,548 - ABZR87_RS02610 0.36 +6.3
555,548 - ABZR87_RS02610 0.36 +6.5
555,729 + ABZR87_RS02610 0.64 +6.5
555,729 + ABZR87_RS02610 0.64 +6.5
555,729 + ABZR87_RS02610 0.64 +5.8
555,730 - ABZR87_RS02610 0.64 +5.2
555,752 - ABZR87_RS02610 0.67 +6.3
555,752 - ABZR87_RS02610 0.67 +6.6

Or see this region's nucleotide sequence