Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02560 and ABZR87_RS02565 are separated by 175 nucleotides ABZR87_RS02565 and ABZR87_RS02570 are separated by 140 nucleotides
ABZR87_RS02560: ABZR87_RS02560 - tripartite tricarboxylate transporter substrate binding protein, at 539,953 to 540,984
_RS02560
ABZR87_RS02565: ABZR87_RS02565 - glutamate synthase subunit beta, at 541,160 to 542,623
_RS02565
ABZR87_RS02570: ABZR87_RS02570 - glutamate synthase-related protein, at 542,764 to 547,485
_RS02570
Position (kb) 541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.317 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.410 kb on + strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.411 kb on - strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.608 kb on + strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.609 kb on - strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.666 kb on + strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.667 kb on - strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.736 kb on + strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.737 kb on - strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.837 kb on + strand, within ABZR87_RS02560 at 540.838 kb on - strand, within ABZR87_RS02560 at 541.019 kb on + strand at 541.019 kb on + strand at 541.020 kb on - strand at 541.020 kb on - strand at 541.050 kb on + strand at 541.050 kb on + strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.051 kb on - strand at 541.065 kb on + strand at 541.065 kb on + strand at 541.066 kb on - strand at 541.302 kb on + strand at 541.393 kb on + strand, within ABZR87_RS02565 at 541.393 kb on + strand, within ABZR87_RS02565 at 541.393 kb on + strand, within ABZR87_RS02565 at 541.394 kb on - strand, within ABZR87_RS02565 at 541.394 kb on - strand, within ABZR87_RS02565 at 541.602 kb on + strand, within ABZR87_RS02565 at 541.602 kb on + strand, within ABZR87_RS02565 at 541.819 kb on - strand, within ABZR87_RS02565 at 541.819 kb on - strand, within ABZR87_RS02565 at 542.074 kb on - strand, within ABZR87_RS02565 at 542.409 kb on + strand, within ABZR87_RS02565 at 542.409 kb on + strand, within ABZR87_RS02565 at 542.410 kb on - strand, within ABZR87_RS02565 at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.544 kb on + strand at 542.545 kb on - strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.574 kb on + strand at 542.575 kb on - strand at 542.575 kb on - strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.706 kb on + strand at 542.707 kb on - strand at 542.707 kb on - strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.807 kb on + strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.808 kb on - strand at 542.831 kb on + strand at 542.831 kb on + strand at 542.832 kb on - strand at 542.916 kb on - strand at 543.092 kb on + strand at 543.092 kb on + strand at 543.092 kb on + strand at 543.093 kb on - strand at 543.093 kb on - strand at 543.098 kb on + strand at 543.099 kb on - strand at 543.099 kb on - strand at 543.099 kb on - strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.176 kb on + strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.177 kb on - strand at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.392 kb on + strand, within ABZR87_RS02570 at 543.393 kb on - strand, within ABZR87_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 540,317 + ABZR87_RS02560 0.35 +0.0 540,410 + ABZR87_RS02560 0.44 -0.8 540,410 + ABZR87_RS02560 0.44 -0.3 540,411 - ABZR87_RS02560 0.44 -1.3 540,411 - ABZR87_RS02560 0.44 -0.9 540,411 - ABZR87_RS02560 0.44 -1.2 540,608 + ABZR87_RS02560 0.63 -0.4 540,608 + ABZR87_RS02560 0.63 -1.9 540,609 - ABZR87_RS02560 0.64 -0.6 540,609 - ABZR87_RS02560 0.64 +0.9 540,666 + ABZR87_RS02560 0.69 -0.5 540,666 + ABZR87_RS02560 0.69 -0.1 540,666 + ABZR87_RS02560 0.69 +0.0 540,666 + ABZR87_RS02560 0.69 +0.1 540,666 + ABZR87_RS02560 0.69 +0.3 540,666 + ABZR87_RS02560 0.69 -0.6 540,666 + ABZR87_RS02560 0.69 -0.1 540,666 + ABZR87_RS02560 0.69 +0.7 540,666 + ABZR87_RS02560 0.69 +0.9 540,666 + ABZR87_RS02560 0.69 -1.3 540,666 + ABZR87_RS02560 0.69 +1.4 540,666 + ABZR87_RS02560 0.69 -1.5 540,666 + ABZR87_RS02560 0.69 -2.3 540,667 - ABZR87_RS02560 0.69 +1.1 540,667 - ABZR87_RS02560 0.69 -1.1 540,667 - ABZR87_RS02560 0.69 +2.7 540,667 - ABZR87_RS02560 0.69 +1.7 540,667 - ABZR87_RS02560 0.69 -0.9 540,736 + ABZR87_RS02560 0.76 -0.3 540,736 + ABZR87_RS02560 0.76 -1.3 540,736 + ABZR87_RS02560 0.76 -0.4 540,737 - ABZR87_RS02560 0.76 -0.8 540,737 - ABZR87_RS02560 0.76 +0.6 540,737 - ABZR87_RS02560 0.76 +0.1 540,837 + ABZR87_RS02560 0.86 -0.6 540,837 + ABZR87_RS02560 0.86 -0.0 540,837 + ABZR87_RS02560 0.86 +1.3 540,838 - ABZR87_RS02560 0.86 +0.9 541,019 + +2.7 541,019 + -0.6 541,020 - -0.3 541,020 - -1.0 541,050 + +0.5 541,050 + +0.9 541,051 - +0.3 541,051 - -0.5 541,051 - -1.2 541,051 - -0.3 541,065 + -1.4 541,065 + +0.9 541,066 - -1.0 541,302 + -2.4 541,393 + ABZR87_RS02565 0.16 -0.2 541,393 + ABZR87_RS02565 0.16 -1.1 541,393 + ABZR87_RS02565 0.16 -1.5 541,394 - ABZR87_RS02565 0.16 -0.5 541,394 - ABZR87_RS02565 0.16 -3.2 541,602 + ABZR87_RS02565 0.30 -0.9 541,602 + ABZR87_RS02565 0.30 -1.2 541,819 - ABZR87_RS02565 0.45 +0.7 541,819 - ABZR87_RS02565 0.45 -1.0 542,074 - ABZR87_RS02565 0.62 -0.6 542,409 + ABZR87_RS02565 0.85 +0.2 542,409 + ABZR87_RS02565 0.85 -1.6 542,410 - ABZR87_RS02565 0.85 -1.3 542,544 + -2.0 542,544 + -0.2 542,544 + -0.3 542,544 + -0.7 542,544 + +0.2 542,544 + -1.0 542,545 - +0.2 542,574 + -0.9 542,574 + -1.5 542,574 + +2.7 542,574 + +0.2 542,574 + -1.3 542,574 + -0.8 542,574 + +0.4 542,575 - -1.5 542,575 - +0.1 542,706 + +2.7 542,706 + -0.9 542,706 + +1.0 542,706 + -0.0 542,707 - -0.6 542,707 - +0.5 542,807 + +0.6 542,807 + -0.9 542,807 + -1.3 542,807 + +0.0 542,808 - +0.5 542,808 - -0.5 542,808 - -0.3 542,808 - +0.4 542,808 - +0.2 542,808 - +0.3 542,808 - -1.0 542,831 + -0.2 542,831 + -1.5 542,832 - -1.0 542,916 - +1.7 543,092 + +1.1 543,092 + +1.0 543,092 + -0.4 543,093 - +0.9 543,093 - +0.1 543,098 + +0.5 543,099 - -0.5 543,099 - -0.3 543,099 - +0.1 543,176 + -1.0 543,176 + -0.3 543,176 + +0.4 543,176 + +0.2 543,176 + +1.4 543,176 + -0.2 543,176 + -1.0 543,176 + -0.3 543,177 - -0.1 543,177 - -0.7 543,177 - -0.8 543,177 - +0.4 543,392 + ABZR87_RS02570 0.13 -0.0 543,392 + ABZR87_RS02570 0.13 -0.2 543,392 + ABZR87_RS02570 0.13 -0.1 543,392 + ABZR87_RS02570 0.13 -1.5 543,392 + ABZR87_RS02570 0.13 +2.7 543,392 + ABZR87_RS02570 0.13 +0.5 543,392 + ABZR87_RS02570 0.13 +0.1 543,392 + ABZR87_RS02570 0.13 -0.4 543,393 - ABZR87_RS02570 0.13 +0.0
Or see this region's nucleotide sequence