Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02540 and ABZR87_RS02545 are separated by 3 nucleotides ABZR87_RS02545 and ABZR87_RS02550 are separated by 37 nucleotides ABZR87_RS02550 and ABZR87_RS02555 overlap by 4 nucleotides
ABZR87_RS02540: ABZR87_RS02540 - VacJ family lipoprotein, at 536,761 to 537,564
_RS02540
ABZR87_RS02545: ABZR87_RS02545 - outer membrane lipid asymmetry maintenance protein MlaD, at 537,568 to 538,089
_RS02545
ABZR87_RS02550: ABZR87_RS02550 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 538,127 to 538,894
_RS02550
ABZR87_RS02555: ABZR87_RS02555 - ABC transporter ATP-binding protein, at 538,891 to 539,724
_RS02555
Position (kb) 538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 537.302 kb on + strand, within ABZR87_RS02540 at 537.303 kb on - strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.371 kb on + strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.372 kb on - strand, within ABZR87_RS02540 at 537.540 kb on + strand at 537.540 kb on + strand at 537.541 kb on - strand at 537.541 kb on - strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.546 kb on + strand at 537.547 kb on - strand at 537.570 kb on - strand at 537.570 kb on - strand at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.653 kb on + strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.654 kb on - strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.761 kb on + strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.762 kb on - strand, within ABZR87_RS02545 at 537.822 kb on - strand, within ABZR87_RS02545 at 537.822 kb on - strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.857 kb on + strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.858 kb on - strand, within ABZR87_RS02545 at 537.971 kb on + strand, within ABZR87_RS02545 at 537.972 kb on - strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 537.999 kb on + strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.000 kb on - strand, within ABZR87_RS02545 at 538.042 kb on + strand at 538.043 kb on - strand at 538.083 kb on + strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.084 kb on - strand at 538.242 kb on + strand, within ABZR87_RS02550 at 538.242 kb on + strand, within ABZR87_RS02550 at 538.243 kb on - strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.251 kb on + strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.252 kb on - strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.395 kb on + strand, within ABZR87_RS02550 at 538.408 kb on + strand, within ABZR87_RS02550 at 538.666 kb on - strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.683 kb on + strand, within ABZR87_RS02550 at 538.684 kb on - strand, within ABZR87_RS02550 at 538.949 kb on + strand at 538.950 kb on - strand at 538.950 kb on - strand at 539.069 kb on + strand, within ABZR87_RS02555 at 539.069 kb on + strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.070 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.076 kb on - strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.101 kb on + strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.102 kb on - strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.213 kb on + strand, within ABZR87_RS02555 at 539.214 kb on - strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.376 kb on + strand, within ABZR87_RS02555 at 539.377 kb on - strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.474 kb on + strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.475 kb on - strand, within ABZR87_RS02555 at 539.670 kb on - strand at 539.764 kb on - strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.821 kb on + strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.822 kb on - strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.823 kb on + strand at 539.824 kb on - strand at 539.862 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 537,302 + ABZR87_RS02540 0.67 -1.2 537,303 - ABZR87_RS02540 0.67 -2.2 537,371 + ABZR87_RS02540 0.76 -0.8 537,371 + ABZR87_RS02540 0.76 -1.7 537,371 + ABZR87_RS02540 0.76 +0.3 537,371 + ABZR87_RS02540 0.76 -1.9 537,371 + ABZR87_RS02540 0.76 +0.1 537,372 - ABZR87_RS02540 0.76 -0.2 537,372 - ABZR87_RS02540 0.76 -1.2 537,372 - ABZR87_RS02540 0.76 -1.4 537,372 - ABZR87_RS02540 0.76 -1.1 537,372 - ABZR87_RS02540 0.76 +0.1 537,372 - ABZR87_RS02540 0.76 -1.2 537,540 + -2.0 537,540 + +0.2 537,541 - +0.7 537,541 - -3.0 537,546 + -0.7 537,546 + -0.5 537,546 + -1.0 537,547 - -1.0 537,570 - -0.8 537,570 - -0.6 537,653 + ABZR87_RS02545 0.16 +1.7 537,653 + ABZR87_RS02545 0.16 -2.3 537,653 + ABZR87_RS02545 0.16 -0.7 537,653 + ABZR87_RS02545 0.16 +2.7 537,654 - ABZR87_RS02545 0.16 -0.7 537,654 - ABZR87_RS02545 0.16 +0.3 537,654 - ABZR87_RS02545 0.16 -0.3 537,761 + ABZR87_RS02545 0.37 -1.9 537,761 + ABZR87_RS02545 0.37 -2.3 537,761 + ABZR87_RS02545 0.37 -0.7 537,761 + ABZR87_RS02545 0.37 -2.7 537,761 + ABZR87_RS02545 0.37 +2.7 537,762 - ABZR87_RS02545 0.37 -1.3 537,762 - ABZR87_RS02545 0.37 -0.7 537,762 - ABZR87_RS02545 0.37 -0.9 537,762 - ABZR87_RS02545 0.37 -0.5 537,822 - ABZR87_RS02545 0.49 -2.5 537,822 - ABZR87_RS02545 0.49 -0.3 537,857 + ABZR87_RS02545 0.55 -0.9 537,857 + ABZR87_RS02545 0.55 -0.3 537,857 + ABZR87_RS02545 0.55 -1.0 537,858 - ABZR87_RS02545 0.56 -0.2 537,858 - ABZR87_RS02545 0.56 +0.5 537,858 - ABZR87_RS02545 0.56 -1.7 537,971 + ABZR87_RS02545 0.77 -1.2 537,972 - ABZR87_RS02545 0.77 -1.3 537,999 + ABZR87_RS02545 0.83 -1.8 537,999 + ABZR87_RS02545 0.83 -0.3 537,999 + ABZR87_RS02545 0.83 -1.4 538,000 - ABZR87_RS02545 0.83 -0.8 538,000 - ABZR87_RS02545 0.83 -0.9 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -0.3 538,000 - ABZR87_RS02545 0.83 -1.3 538,000 - ABZR87_RS02545 0.83 -0.5 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -1.5 538,000 - ABZR87_RS02545 0.83 -2.7 538,042 + +0.8 538,043 - -1.9 538,083 + -1.3 538,084 - -3.9 538,084 - +0.9 538,084 - -0.2 538,242 + ABZR87_RS02550 0.15 -1.3 538,242 + ABZR87_RS02550 0.15 -0.3 538,243 - ABZR87_RS02550 0.15 -1.3 538,251 + ABZR87_RS02550 0.16 -0.5 538,251 + ABZR87_RS02550 0.16 -1.3 538,251 + ABZR87_RS02550 0.16 -0.2 538,252 - ABZR87_RS02550 0.16 -1.0 538,252 - ABZR87_RS02550 0.16 -0.5 538,252 - ABZR87_RS02550 0.16 -2.5 538,395 + ABZR87_RS02550 0.35 -3.0 538,395 + ABZR87_RS02550 0.35 -1.7 538,408 + ABZR87_RS02550 0.37 -1.3 538,666 - ABZR87_RS02550 0.70 -1.6 538,683 + ABZR87_RS02550 0.72 -0.7 538,683 + ABZR87_RS02550 0.72 -1.8 538,683 + ABZR87_RS02550 0.72 -2.6 538,684 - ABZR87_RS02550 0.73 +0.1 538,949 + -2.3 538,950 - +1.7 538,950 - -0.3 539,069 + ABZR87_RS02555 0.21 -0.7 539,069 + ABZR87_RS02555 0.21 -1.4 539,070 - ABZR87_RS02555 0.21 -2.3 539,070 - ABZR87_RS02555 0.21 +0.7 539,070 - ABZR87_RS02555 0.21 -1.9 539,076 - ABZR87_RS02555 0.22 -1.2 539,076 - ABZR87_RS02555 0.22 -0.9 539,076 - ABZR87_RS02555 0.22 -0.8 539,076 - ABZR87_RS02555 0.22 -1.3 539,076 - ABZR87_RS02555 0.22 -1.5 539,076 - ABZR87_RS02555 0.22 -0.7 539,076 - ABZR87_RS02555 0.22 -1.6 539,076 - ABZR87_RS02555 0.22 -2.8 539,101 + ABZR87_RS02555 0.25 -0.2 539,101 + ABZR87_RS02555 0.25 -0.7 539,101 + ABZR87_RS02555 0.25 -1.5 539,102 - ABZR87_RS02555 0.25 -1.4 539,102 - ABZR87_RS02555 0.25 -2.9 539,102 - ABZR87_RS02555 0.25 -2.0 539,213 + ABZR87_RS02555 0.39 -1.0 539,213 + ABZR87_RS02555 0.39 +1.3 539,213 + ABZR87_RS02555 0.39 -1.8 539,213 + ABZR87_RS02555 0.39 -1.3 539,214 - ABZR87_RS02555 0.39 -0.3 539,376 + ABZR87_RS02555 0.58 -1.1 539,376 + ABZR87_RS02555 0.58 -1.7 539,377 - ABZR87_RS02555 0.58 -2.2 539,474 + ABZR87_RS02555 0.70 +0.3 539,474 + ABZR87_RS02555 0.70 -1.0 539,475 - ABZR87_RS02555 0.70 -2.0 539,475 - ABZR87_RS02555 0.70 -1.3 539,475 - ABZR87_RS02555 0.70 -0.3 539,475 - ABZR87_RS02555 0.70 -1.9 539,475 - ABZR87_RS02555 0.70 -1.7 539,475 - ABZR87_RS02555 0.70 -0.9 539,670 - +0.2 539,764 - -0.8 539,821 + -0.8 539,821 + -0.2 539,821 + -0.4 539,821 + +1.1 539,821 + -1.0 539,822 - -0.8 539,822 - -0.5 539,822 - -0.9 539,822 - +1.1 539,822 - -0.1 539,823 + +0.9 539,823 + -1.7 539,823 + -0.2 539,823 + +1.0 539,823 + +1.1 539,823 + -0.5 539,823 + -0.5 539,824 - -0.3 539,862 + +1.1
Or see this region's nucleotide sequence