Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02455 and ABZR87_RS02460 are separated by 31 nucleotides ABZR87_RS02460 and ABZR87_RS02465 overlap by 8 nucleotides ABZR87_RS02465 and ABZR87_RS02470 overlap by 4 nucleotides ABZR87_RS02470 and ABZR87_RS02475 are separated by 47 nucleotides ABZR87_RS02475 and ABZR87_RS02480 are separated by 75 nucleotides
ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361
_RS02455
ABZR87_RS02460: ABZR87_RS02460 - phosphoribosyl-ATP diphosphatase, at 524,393 to 524,767
_RS02460
ABZR87_RS02465: ABZR87_RS02465 - phosphoribosyl-AMP cyclohydrolase, at 524,760 to 525,182
_RS02465
ABZR87_RS02470: ABZR87_RS02470 - imidazole glycerol phosphate synthase subunit HisF, at 525,179 to 525,955
_RS02470
ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746
_RS02475
ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475
_RS02480
Position (kb) 525
526 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.351 kb on + strand at 524.351 kb on + strand at 524.351 kb on + strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.791 kb on + strand at 524.791 kb on + strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 525.182 kb on + strand at 525.183 kb on - strand at 525.195 kb on - strand at 525.950 kb on + strand at 525.950 kb on + strand at 525.950 kb on + strand at 526.746 kb on + strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.906 kb on - strand, within ABZR87_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 524,180 + ABZR87_RS02455 0.51 -0.9 524,180 + ABZR87_RS02455 0.51 +1.5 524,180 + ABZR87_RS02455 0.51 +0.2 524,180 + ABZR87_RS02455 0.51 +0.2 524,181 - ABZR87_RS02455 0.52 -0.4 524,181 - ABZR87_RS02455 0.52 +0.9 524,181 - ABZR87_RS02455 0.52 -0.3 524,208 + ABZR87_RS02455 0.59 -0.3 524,208 + ABZR87_RS02455 0.59 -0.6 524,208 + ABZR87_RS02455 0.59 +0.4 524,208 + ABZR87_RS02455 0.59 -0.4 524,208 + ABZR87_RS02455 0.59 +1.1 524,208 + ABZR87_RS02455 0.59 -0.4 524,208 + ABZR87_RS02455 0.59 -0.4 524,208 + ABZR87_RS02455 0.59 +0.3 524,208 + ABZR87_RS02455 0.59 -0.9 524,209 - ABZR87_RS02455 0.59 +0.6 524,209 - ABZR87_RS02455 0.59 +0.3 524,209 - ABZR87_RS02455 0.59 -0.6 524,209 - ABZR87_RS02455 0.59 +2.6 524,214 - ABZR87_RS02455 0.61 -0.4 524,214 - ABZR87_RS02455 0.61 -0.7 524,214 - ABZR87_RS02455 0.61 +0.9 524,244 + ABZR87_RS02455 0.69 +0.3 524,244 + ABZR87_RS02455 0.69 -0.5 524,279 + ABZR87_RS02455 0.78 +0.5 524,279 + ABZR87_RS02455 0.78 -0.6 524,280 - ABZR87_RS02455 0.78 -1.1 524,280 - ABZR87_RS02455 0.78 +0.8 524,286 + ABZR87_RS02455 0.80 +1.7 524,286 + ABZR87_RS02455 0.80 -0.8 524,287 - ABZR87_RS02455 0.80 +0.0 524,287 - ABZR87_RS02455 0.80 +1.0 524,351 + +0.4 524,351 + -0.2 524,351 + -0.1 524,352 - -1.2 524,352 - +1.6 524,352 - -0.6 524,352 - -1.8 524,352 - -0.3 524,352 - +0.2 524,352 - +0.5 524,352 - +0.0 524,791 + +0.2 524,791 + +1.4 524,792 - +0.1 524,792 - -0.0 524,792 - +0.2 524,792 - +0.1 524,792 - -0.2 524,792 - +0.6 524,792 - -0.7 525,182 + -0.6 525,183 - +0.0 525,195 - -1.0 525,950 + +3.7 525,950 + +1.4 525,950 + -0.8 526,746 + +0.7 526,747 - +0.2 526,747 - -0.3 526,747 - +1.0 526,747 - +0.2 526,747 - -0.9 526,906 - ABZR87_RS02480 0.13 +1.3
Or see this region's nucleotide sequence