Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02185 and ABZR87_RS02190 are separated by 78 nucleotides ABZR87_RS02190 and ABZR87_RS02195 are separated by 46 nucleotides
ABZR87_RS02185: ABZR87_RS02185 - MDR family oxidoreductase, at 469,568 to 470,584
_RS02185
ABZR87_RS02190: ABZR87_RS02190 - DsbC family protein, at 470,663 to 471,409
_RS02190
ABZR87_RS02195: ABZR87_RS02195 - UbiH/UbiF family hydroxylase, at 471,456 to 472,751
_RS02195
Position (kb) 470
471
472 Strain fitness (log2 ratio) -2
-1
0
1
2 at 469.849 kb on - strand, within ABZR87_RS02185 at 470.163 kb on + strand, within ABZR87_RS02185 at 470.164 kb on - strand, within ABZR87_RS02185 at 470.164 kb on - strand, within ABZR87_RS02185 at 470.387 kb on + strand, within ABZR87_RS02185 at 470.387 kb on + strand, within ABZR87_RS02185 at 470.388 kb on - strand, within ABZR87_RS02185 at 470.427 kb on + strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.428 kb on - strand, within ABZR87_RS02185 at 470.665 kb on - strand at 470.665 kb on - strand at 470.665 kb on - strand at 470.665 kb on - strand at 470.810 kb on - strand, within ABZR87_RS02190 at 470.810 kb on - strand, within ABZR87_RS02190 at 470.946 kb on + strand, within ABZR87_RS02190 at 470.947 kb on - strand, within ABZR87_RS02190 at 470.947 kb on - strand, within ABZR87_RS02190 at 470.947 kb on - strand, within ABZR87_RS02190 at 470.997 kb on + strand, within ABZR87_RS02190 at 470.998 kb on - strand, within ABZR87_RS02190 at 471.171 kb on + strand, within ABZR87_RS02190 at 471.171 kb on + strand, within ABZR87_RS02190 at 471.193 kb on - strand, within ABZR87_RS02190 at 471.193 kb on - strand, within ABZR87_RS02190 at 471.222 kb on + strand, within ABZR87_RS02190 at 471.222 kb on + strand, within ABZR87_RS02190 at 471.223 kb on - strand, within ABZR87_RS02190 at 471.223 kb on - strand, within ABZR87_RS02190 at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.338 kb on + strand at 471.339 kb on - strand at 471.339 kb on - strand at 471.339 kb on - strand at 471.339 kb on - strand at 471.339 kb on - strand at 471.342 kb on + strand at 471.342 kb on + strand at 471.342 kb on + strand at 471.342 kb on + strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.343 kb on - strand at 471.397 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.409 kb on + strand at 471.410 kb on - strand at 471.410 kb on - strand at 471.410 kb on - strand at 471.492 kb on - strand at 471.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 469,849 - ABZR87_RS02185 0.28 -0.1 470,163 + ABZR87_RS02185 0.59 -1.2 470,164 - ABZR87_RS02185 0.59 +0.9 470,164 - ABZR87_RS02185 0.59 -0.2 470,387 + ABZR87_RS02185 0.81 -0.6 470,387 + ABZR87_RS02185 0.81 -1.9 470,388 - ABZR87_RS02185 0.81 +0.1 470,427 + ABZR87_RS02185 0.84 -1.5 470,428 - ABZR87_RS02185 0.85 -0.2 470,428 - ABZR87_RS02185 0.85 -0.3 470,428 - ABZR87_RS02185 0.85 -0.9 470,428 - ABZR87_RS02185 0.85 -0.2 470,428 - ABZR87_RS02185 0.85 -0.3 470,428 - ABZR87_RS02185 0.85 -0.2 470,428 - ABZR87_RS02185 0.85 -0.2 470,665 - -1.2 470,665 - +0.1 470,665 - -0.4 470,665 - -0.1 470,810 - ABZR87_RS02190 0.20 +0.7 470,810 - ABZR87_RS02190 0.20 +0.7 470,946 + ABZR87_RS02190 0.38 +1.5 470,947 - ABZR87_RS02190 0.38 +1.1 470,947 - ABZR87_RS02190 0.38 +2.0 470,947 - ABZR87_RS02190 0.38 +1.3 470,997 + ABZR87_RS02190 0.45 +0.1 470,998 - ABZR87_RS02190 0.45 +1.1 471,171 + ABZR87_RS02190 0.68 -0.2 471,171 + ABZR87_RS02190 0.68 +0.8 471,193 - ABZR87_RS02190 0.71 -0.3 471,193 - ABZR87_RS02190 0.71 -0.6 471,222 + ABZR87_RS02190 0.75 +1.4 471,222 + ABZR87_RS02190 0.75 +0.5 471,223 - ABZR87_RS02190 0.75 +0.7 471,223 - ABZR87_RS02190 0.75 +1.1 471,338 + -0.4 471,338 + -0.1 471,338 + +2.0 471,338 + +1.0 471,338 + -0.9 471,338 + -0.4 471,338 + -1.3 471,338 + +1.1 471,338 + +1.3 471,338 + +0.5 471,338 + +0.3 471,338 + +0.3 471,339 - +0.5 471,339 - -0.5 471,339 - +0.9 471,339 - -1.2 471,339 - +0.8 471,342 + +1.1 471,342 + +0.2 471,342 + -0.2 471,342 + +0.5 471,343 - +0.3 471,343 - -1.2 471,343 - +0.3 471,343 - +0.3 471,343 - +0.4 471,343 - +1.0 471,343 - +0.6 471,397 + -0.1 471,409 + +0.3 471,409 + +1.1 471,409 + +0.2 471,409 + -1.4 471,409 + +1.4 471,409 + +0.7 471,409 + -1.5 471,409 + +0.0 471,409 + +0.2 471,410 - +0.8 471,410 - -0.4 471,410 - +0.5 471,492 - +0.7 471,492 - -1.3
Or see this region's nucleotide sequence