Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01990 and ABZR87_RS01995 are separated by 380 nucleotides ABZR87_RS01995 and ABZR87_RS02000 are separated by 121 nucleotides
ABZR87_RS01990: ABZR87_RS01990 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase, at 424,125 to 424,778
_RS01990
ABZR87_RS01995: ABZR87_RS01995 - porin, at 425,159 to 426,337
_RS01995
ABZR87_RS02000: ABZR87_RS02000 - tripartite tricarboxylate transporter substrate binding protein, at 426,459 to 427,484
_RS02000
Position (kb) 425
426
427 Strain fitness (log2 ratio) -2
-1
0
1
2 at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.778 kb on + strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.779 kb on - strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.782 kb on + strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.783 kb on - strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.824 kb on + strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.825 kb on - strand at 424.880 kb on + strand at 424.919 kb on + strand at 424.920 kb on - strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.056 kb on + strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.057 kb on - strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.061 kb on + strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.062 kb on - strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.134 kb on + strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.135 kb on - strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.138 kb on + strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.139 kb on - strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.238 kb on - strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.264 kb on + strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.265 kb on - strand at 425.308 kb on - strand, within ABZR87_RS01995 at 425.392 kb on - strand, within ABZR87_RS01995 at 425.433 kb on - strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.537 kb on + strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.538 kb on - strand, within ABZR87_RS01995 at 425.582 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.594 kb on + strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.595 kb on - strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.651 kb on + strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.652 kb on - strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.753 kb on + strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.754 kb on - strand, within ABZR87_RS01995 at 425.780 kb on - strand, within ABZR87_RS01995 at 425.787 kb on - strand, within ABZR87_RS01995 at 425.843 kb on + strand, within ABZR87_RS01995 at 425.843 kb on + strand, within ABZR87_RS01995 at 425.844 kb on - strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.879 kb on + strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.880 kb on - strand, within ABZR87_RS01995 at 425.919 kb on - strand, within ABZR87_RS01995 at 425.981 kb on + strand, within ABZR87_RS01995 at 425.981 kb on + strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.982 kb on - strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.984 kb on + strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 425.985 kb on - strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.002 kb on + strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.003 kb on - strand, within ABZR87_RS01995 at 426.038 kb on + strand, within ABZR87_RS01995 at 426.038 kb on + strand, within ABZR87_RS01995 at 426.039 kb on - strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.041 kb on + strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.042 kb on - strand, within ABZR87_RS01995 at 426.044 kb on + strand, within ABZR87_RS01995 at 426.045 kb on - strand, within ABZR87_RS01995 at 426.045 kb on - strand, within ABZR87_RS01995 at 426.125 kb on + strand, within ABZR87_RS01995 at 426.125 kb on + strand, within ABZR87_RS01995 at 426.126 kb on - strand, within ABZR87_RS01995 at 426.126 kb on - strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.152 kb on + strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.153 kb on - strand, within ABZR87_RS01995 at 426.167 kb on + strand, within ABZR87_RS01995 at 426.206 kb on + strand, within ABZR87_RS01995 at 426.207 kb on - strand, within ABZR87_RS01995 at 426.207 kb on - strand, within ABZR87_RS01995 at 426.248 kb on + strand at 426.248 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.272 kb on + strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.273 kb on - strand at 426.422 kb on + strand at 426.422 kb on + strand at 426.745 kb on - strand, within ABZR87_RS02000 at 426.943 kb on - strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.059 kb on + strand, within ABZR87_RS02000 at 427.060 kb on - strand, within ABZR87_RS02000 at 427.248 kb on + strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000 at 427.249 kb on - strand, within ABZR87_RS02000
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 424,778 + -1.1 424,778 + -0.3 424,778 + -1.1 424,778 + +0.4 424,778 + -1.4 424,778 + -0.4 424,778 + -0.7 424,778 + +0.7 424,779 - +0.8 424,779 - -0.6 424,779 - -0.8 424,779 - +0.1 424,779 - -0.4 424,779 - -0.8 424,779 - -0.5 424,779 - -0.2 424,779 - +2.7 424,779 - -1.3 424,779 - +1.0 424,779 - -0.9 424,779 - -0.1 424,782 + -1.5 424,782 + +1.4 424,782 + +1.0 424,782 + -0.1 424,782 + -1.0 424,782 + -1.2 424,782 + -1.1 424,782 + +0.1 424,782 + -0.9 424,783 - -0.1 424,783 - +0.5 424,783 - +0.9 424,783 - -0.8 424,783 - +1.2 424,783 - -0.8 424,783 - -0.1 424,783 - +0.9 424,783 - -0.5 424,824 + -0.9 424,824 + -1.0 424,824 + -0.9 424,824 + +0.1 424,824 + -0.8 424,825 - -0.2 424,825 - +1.3 424,825 - -0.5 424,825 - -0.7 424,825 - +0.5 424,825 - -1.4 424,880 + +1.7 424,919 + -0.1 424,920 - +0.1 425,056 + -0.5 425,056 + -0.4 425,056 + +0.2 425,056 + -1.7 425,057 - +0.1 425,057 - -0.3 425,057 - +0.3 425,057 - +0.3 425,057 - +0.9 425,057 - +0.1 425,057 - +1.9 425,057 - +1.6 425,057 - +0.6 425,057 - -0.4 425,061 + -0.8 425,061 + -0.2 425,061 + +0.2 425,062 - -0.6 425,062 - +0.7 425,062 - -0.2 425,062 - -0.1 425,062 - +1.3 425,062 - -0.2 425,062 - -0.7 425,062 - -0.1 425,062 - -1.5 425,062 - +0.1 425,134 + -0.5 425,134 + +0.3 425,134 + +0.2 425,134 + -0.2 425,134 + +0.4 425,135 - +0.3 425,135 - -0.7 425,135 - +1.0 425,138 + -0.0 425,138 + +0.8 425,138 + -0.5 425,138 + +0.4 425,139 - -1.1 425,139 - -0.7 425,139 - +1.4 425,139 - -0.3 425,139 - +0.7 425,139 - -0.1 425,237 + -0.1 425,237 + +0.3 425,237 + -1.3 425,237 + +1.3 425,238 - +1.0 425,238 - -0.8 425,238 - -0.7 425,238 - -0.4 425,264 + +1.2 425,264 + -0.7 425,264 + +0.4 425,264 + +0.6 425,265 - +0.3 425,265 - -0.2 425,265 - +0.3 425,265 - -0.4 425,265 - -0.5 425,265 - +0.3 425,308 - ABZR87_RS01995 0.13 -0.1 425,392 - ABZR87_RS01995 0.20 -1.5 425,433 - ABZR87_RS01995 0.23 -0.9 425,537 + ABZR87_RS01995 0.32 -0.9 425,537 + ABZR87_RS01995 0.32 +0.1 425,537 + ABZR87_RS01995 0.32 -0.7 425,537 + ABZR87_RS01995 0.32 -0.8 425,537 + ABZR87_RS01995 0.32 -0.7 425,538 - ABZR87_RS01995 0.32 -1.0 425,538 - ABZR87_RS01995 0.32 +0.7 425,538 - ABZR87_RS01995 0.32 +0.0 425,538 - ABZR87_RS01995 0.32 +1.1 425,538 - ABZR87_RS01995 0.32 +0.6 425,538 - ABZR87_RS01995 0.32 -0.9 425,582 + ABZR87_RS01995 0.36 +0.9 425,594 + ABZR87_RS01995 0.37 +0.1 425,594 + ABZR87_RS01995 0.37 -0.8 425,595 - ABZR87_RS01995 0.37 +0.2 425,595 - ABZR87_RS01995 0.37 +1.4 425,595 - ABZR87_RS01995 0.37 +0.9 425,595 - ABZR87_RS01995 0.37 -0.2 425,651 + ABZR87_RS01995 0.42 -0.2 425,651 + ABZR87_RS01995 0.42 -2.1 425,651 + ABZR87_RS01995 0.42 -0.3 425,651 + ABZR87_RS01995 0.42 +0.0 425,651 + ABZR87_RS01995 0.42 +0.7 425,652 - ABZR87_RS01995 0.42 +0.2 425,652 - ABZR87_RS01995 0.42 -0.5 425,753 + ABZR87_RS01995 0.50 +0.7 425,753 + ABZR87_RS01995 0.50 +0.6 425,754 - ABZR87_RS01995 0.50 +1.1 425,754 - ABZR87_RS01995 0.50 -1.0 425,780 - ABZR87_RS01995 0.53 -0.2 425,787 - ABZR87_RS01995 0.53 +0.6 425,843 + ABZR87_RS01995 0.58 -0.3 425,843 + ABZR87_RS01995 0.58 -1.0 425,844 - ABZR87_RS01995 0.58 -0.2 425,879 + ABZR87_RS01995 0.61 -2.0 425,879 + ABZR87_RS01995 0.61 +0.1 425,879 + ABZR87_RS01995 0.61 +0.1 425,880 - ABZR87_RS01995 0.61 -0.7 425,880 - ABZR87_RS01995 0.61 +0.2 425,880 - ABZR87_RS01995 0.61 -0.0 425,919 - ABZR87_RS01995 0.64 -2.1 425,981 + ABZR87_RS01995 0.70 +1.4 425,981 + ABZR87_RS01995 0.70 +0.3 425,982 - ABZR87_RS01995 0.70 +1.1 425,982 - ABZR87_RS01995 0.70 -1.1 425,982 - ABZR87_RS01995 0.70 -0.0 425,982 - ABZR87_RS01995 0.70 +0.3 425,982 - ABZR87_RS01995 0.70 -1.7 425,982 - ABZR87_RS01995 0.70 -1.3 425,984 + ABZR87_RS01995 0.70 +1.2 425,984 + ABZR87_RS01995 0.70 +0.6 425,984 + ABZR87_RS01995 0.70 +0.7 425,984 + ABZR87_RS01995 0.70 -0.4 425,985 - ABZR87_RS01995 0.70 +1.1 425,985 - ABZR87_RS01995 0.70 +0.1 425,985 - ABZR87_RS01995 0.70 +0.5 425,985 - ABZR87_RS01995 0.70 -0.4 426,002 + ABZR87_RS01995 0.72 -1.1 426,002 + ABZR87_RS01995 0.72 -1.7 426,002 + ABZR87_RS01995 0.72 -1.2 426,002 + ABZR87_RS01995 0.72 +2.4 426,003 - ABZR87_RS01995 0.72 -0.4 426,003 - ABZR87_RS01995 0.72 +0.0 426,003 - ABZR87_RS01995 0.72 -0.1 426,038 + ABZR87_RS01995 0.75 -0.4 426,038 + ABZR87_RS01995 0.75 -0.5 426,039 - ABZR87_RS01995 0.75 +0.3 426,041 + ABZR87_RS01995 0.75 -0.2 426,041 + ABZR87_RS01995 0.75 +0.3 426,041 + ABZR87_RS01995 0.75 -0.2 426,041 + ABZR87_RS01995 0.75 -2.4 426,041 + ABZR87_RS01995 0.75 +0.1 426,041 + ABZR87_RS01995 0.75 +0.9 426,042 - ABZR87_RS01995 0.75 -0.5 426,042 - ABZR87_RS01995 0.75 +0.8 426,042 - ABZR87_RS01995 0.75 -0.2 426,042 - ABZR87_RS01995 0.75 +0.3 426,042 - ABZR87_RS01995 0.75 +1.7 426,044 + ABZR87_RS01995 0.75 +1.7 426,045 - ABZR87_RS01995 0.75 -0.0 426,045 - ABZR87_RS01995 0.75 +1.6 426,125 + ABZR87_RS01995 0.82 +1.3 426,125 + ABZR87_RS01995 0.82 +0.3 426,126 - ABZR87_RS01995 0.82 -0.6 426,126 - ABZR87_RS01995 0.82 +0.6 426,152 + ABZR87_RS01995 0.84 +2.7 426,152 + ABZR87_RS01995 0.84 -0.0 426,152 + ABZR87_RS01995 0.84 +0.4 426,153 - ABZR87_RS01995 0.84 -1.6 426,153 - ABZR87_RS01995 0.84 -1.1 426,153 - ABZR87_RS01995 0.84 +0.6 426,153 - ABZR87_RS01995 0.84 -0.0 426,167 + ABZR87_RS01995 0.85 -0.0 426,206 + ABZR87_RS01995 0.89 -0.6 426,207 - ABZR87_RS01995 0.89 -0.5 426,207 - ABZR87_RS01995 0.89 -0.3 426,248 + +0.8 426,248 + +0.6 426,272 + +1.6 426,272 + -1.4 426,272 + +0.5 426,272 + -0.4 426,272 + -0.2 426,272 + -1.1 426,273 - -1.5 426,273 - +0.2 426,273 - -0.9 426,273 - +0.4 426,273 - +0.0 426,273 - +0.2 426,273 - -0.1 426,422 + +1.6 426,422 + -0.8 426,745 - ABZR87_RS02000 0.28 -0.0 426,943 - ABZR87_RS02000 0.47 +0.3 427,059 + ABZR87_RS02000 0.58 -1.0 427,059 + ABZR87_RS02000 0.58 -0.1 427,059 + ABZR87_RS02000 0.58 +1.4 427,059 + ABZR87_RS02000 0.58 -0.8 427,060 - ABZR87_RS02000 0.59 -0.2 427,248 + ABZR87_RS02000 0.77 +0.5 427,249 - ABZR87_RS02000 0.77 +0.7 427,249 - ABZR87_RS02000 0.77 +0.9 427,249 - ABZR87_RS02000 0.77 -0.5 427,249 - ABZR87_RS02000 0.77 -0.7 427,249 - ABZR87_RS02000 0.77 +0.5
Or see this region's nucleotide sequence