Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01775 and ABZR87_RS01780 are separated by 65 nucleotides ABZR87_RS01780 and ABZR87_RS01785 are separated by 12 nucleotides ABZR87_RS01785 and ABZR87_RS01790 are separated by 66 nucleotides ABZR87_RS01790 and ABZR87_RS01795 are separated by 22 nucleotides
ABZR87_RS01775: ABZR87_RS01775 - hypoxanthine-guanine phosphoribosyltransferase, at 378,620 to 379,168
_RS01775
ABZR87_RS01780: ABZR87_RS01780 - MarC family protein, at 379,234 to 379,827
_RS01780
ABZR87_RS01785: ABZR87_RS01785 - 2OG-Fe(II) oxygenase, at 379,840 to 380,706
_RS01785
ABZR87_RS01790: ABZR87_RS01790 - lytic transglycosylase domain-containing protein, at 380,773 to 381,534
_RS01790
ABZR87_RS01795: ABZR87_RS01795 - proline--tRNA ligase, at 381,557 to 383,281
_RS01795
Position (kb) 379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 378.916 kb on + strand, within ABZR87_RS01775 at 378.917 kb on - strand, within ABZR87_RS01775 at 379.008 kb on - strand, within ABZR87_RS01775 at 379.055 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.092 kb on - strand, within ABZR87_RS01775 at 379.124 kb on + strand at 379.125 kb on - strand at 379.125 kb on - strand at 379.405 kb on + strand, within ABZR87_RS01780 at 379.405 kb on + strand, within ABZR87_RS01780 at 379.821 kb on - strand at 379.821 kb on - strand at 379.856 kb on + strand at 379.857 kb on - strand at 379.857 kb on - strand at 379.961 kb on + strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.148 kb on - strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.316 kb on + strand, within ABZR87_RS01785 at 380.463 kb on + strand, within ABZR87_RS01785 at 380.463 kb on + strand, within ABZR87_RS01785 at 380.464 kb on - strand, within ABZR87_RS01785 at 380.589 kb on - strand, within ABZR87_RS01785 at 380.589 kb on - strand, within ABZR87_RS01785 at 380.742 kb on + strand at 380.742 kb on + strand at 380.742 kb on + strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.747 kb on + strand at 380.748 kb on - strand at 380.748 kb on - strand at 380.748 kb on - strand at 380.802 kb on + strand at 380.802 kb on + strand at 380.802 kb on + strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.921 kb on + strand, within ABZR87_RS01790 at 380.922 kb on - strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 381.005 kb on + strand, within ABZR87_RS01790 at 381.005 kb on + strand, within ABZR87_RS01790 at 381.006 kb on - strand, within ABZR87_RS01790 at 381.032 kb on + strand, within ABZR87_RS01790 at 381.032 kb on + strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.056 kb on + strand, within ABZR87_RS01790 at 381.057 kb on - strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.245 kb on + strand, within ABZR87_RS01790 at 381.246 kb on - strand, within ABZR87_RS01790 at 381.246 kb on - strand, within ABZR87_RS01790 at 381.248 kb on + strand, within ABZR87_RS01790 at 381.248 kb on + strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.275 kb on - strand, within ABZR87_RS01790 at 381.275 kb on - strand, within ABZR87_RS01790 at 381.335 kb on + strand, within ABZR87_RS01790 at 381.364 kb on + strand, within ABZR87_RS01790 at 381.364 kb on + strand, within ABZR87_RS01790 at 381.365 kb on - strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 378,916 + ABZR87_RS01775 0.54 -0.3 378,917 - ABZR87_RS01775 0.54 +1.3 379,008 - ABZR87_RS01775 0.71 -0.2 379,055 + ABZR87_RS01775 0.79 -0.9 379,091 + ABZR87_RS01775 0.86 -1.9 379,091 + ABZR87_RS01775 0.86 -0.3 379,091 + ABZR87_RS01775 0.86 +0.3 379,092 - ABZR87_RS01775 0.86 +0.0 379,124 + +0.5 379,125 - +0.9 379,125 - -0.3 379,405 + ABZR87_RS01780 0.29 -1.4 379,405 + ABZR87_RS01780 0.29 +0.1 379,821 - +0.9 379,821 - -1.3 379,856 + +0.3 379,857 - -0.5 379,857 - -0.9 379,961 + ABZR87_RS01785 0.14 +0.1 379,962 - ABZR87_RS01785 0.14 +0.5 379,962 - ABZR87_RS01785 0.14 -0.1 379,962 - ABZR87_RS01785 0.14 -0.1 380,054 + ABZR87_RS01785 0.25 -0.8 380,054 + ABZR87_RS01785 0.25 +1.1 380,054 + ABZR87_RS01785 0.25 -0.2 380,055 - ABZR87_RS01785 0.25 -2.4 380,055 - ABZR87_RS01785 0.25 +0.7 380,148 - ABZR87_RS01785 0.36 -1.2 380,165 + ABZR87_RS01785 0.37 +0.1 380,165 + ABZR87_RS01785 0.37 +1.1 380,166 - ABZR87_RS01785 0.38 -1.2 380,166 - ABZR87_RS01785 0.38 -0.7 380,166 - ABZR87_RS01785 0.38 -0.8 380,166 - ABZR87_RS01785 0.38 -1.2 380,316 + ABZR87_RS01785 0.55 -2.8 380,463 + ABZR87_RS01785 0.72 -2.6 380,463 + ABZR87_RS01785 0.72 -3.1 380,464 - ABZR87_RS01785 0.72 -1.8 380,589 - ABZR87_RS01785 0.86 -0.4 380,589 - ABZR87_RS01785 0.86 -1.1 380,742 + -0.8 380,742 + -0.6 380,742 + -2.1 380,743 - -0.2 380,743 - -0.3 380,743 - +0.6 380,743 - -1.0 380,747 + +0.3 380,748 - -0.6 380,748 - -0.3 380,748 - +0.8 380,802 + +1.8 380,802 + +2.9 380,802 + +2.3 380,803 - +1.1 380,803 - +0.8 380,803 - +1.6 380,803 - +1.8 380,921 + ABZR87_RS01790 0.19 +0.5 380,922 - ABZR87_RS01790 0.20 +0.5 380,987 + ABZR87_RS01790 0.28 +6.0 380,987 + ABZR87_RS01790 0.28 +5.5 380,987 + ABZR87_RS01790 0.28 +5.7 380,987 + ABZR87_RS01790 0.28 +4.7 380,987 + ABZR87_RS01790 0.28 +5.8 380,987 + ABZR87_RS01790 0.28 +6.1 380,988 - ABZR87_RS01790 0.28 +6.0 380,988 - ABZR87_RS01790 0.28 +5.9 380,988 - ABZR87_RS01790 0.28 +5.4 381,005 + ABZR87_RS01790 0.30 +6.1 381,005 + ABZR87_RS01790 0.30 +5.7 381,006 - ABZR87_RS01790 0.31 +5.8 381,032 + ABZR87_RS01790 0.34 +5.6 381,032 + ABZR87_RS01790 0.34 +5.9 381,033 - ABZR87_RS01790 0.34 +6.1 381,033 - ABZR87_RS01790 0.34 +5.9 381,033 - ABZR87_RS01790 0.34 +5.5 381,056 + ABZR87_RS01790 0.37 +5.7 381,057 - ABZR87_RS01790 0.37 +5.7 381,170 + ABZR87_RS01790 0.52 +6.6 381,170 + ABZR87_RS01790 0.52 +6.1 381,170 + ABZR87_RS01790 0.52 +5.6 381,170 + ABZR87_RS01790 0.52 +5.3 381,171 - ABZR87_RS01790 0.52 +6.0 381,171 - ABZR87_RS01790 0.52 +6.4 381,171 - ABZR87_RS01790 0.52 +6.3 381,245 + ABZR87_RS01790 0.62 +5.5 381,246 - ABZR87_RS01790 0.62 +6.0 381,246 - ABZR87_RS01790 0.62 +5.8 381,248 + ABZR87_RS01790 0.62 +5.1 381,248 + ABZR87_RS01790 0.62 +5.9 381,249 - ABZR87_RS01790 0.62 +5.6 381,249 - ABZR87_RS01790 0.62 +6.2 381,249 - ABZR87_RS01790 0.62 +6.2 381,275 - ABZR87_RS01790 0.66 +5.7 381,275 - ABZR87_RS01790 0.66 +6.2 381,335 + ABZR87_RS01790 0.74 +5.8 381,364 + ABZR87_RS01790 0.78 +6.2 381,364 + ABZR87_RS01790 0.78 +5.8 381,365 - ABZR87_RS01790 0.78 +5.8 381,431 + ABZR87_RS01790 0.86 +6.3 381,431 + ABZR87_RS01790 0.86 +6.3 381,431 + ABZR87_RS01790 0.86 +6.2 381,431 + ABZR87_RS01790 0.86 +6.2 381,431 + ABZR87_RS01790 0.86 +5.6 381,431 + ABZR87_RS01790 0.86 +5.4 381,431 + ABZR87_RS01790 0.86 +4.7 381,432 - ABZR87_RS01790 0.86 +5.8 381,432 - ABZR87_RS01790 0.86 +5.8 381,432 - ABZR87_RS01790 0.86 +4.9 381,432 - ABZR87_RS01790 0.86 +5.9 381,432 - ABZR87_RS01790 0.86 +5.9 381,558 + +5.0
Or see this region's nucleotide sequence