Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01550 and ABZR87_RS01555 are separated by 101 nucleotides ABZR87_RS01555 and ABZR87_RS01560 overlap by 4 nucleotides ABZR87_RS01560 and ABZR87_RS01565 are separated by 473 nucleotides
ABZR87_RS01550: ABZR87_RS01550 - L-arabinose ABC transporter permease AraH, at 326,649 to 327,659
_RS01550
ABZR87_RS01555: ABZR87_RS01555 - barstar family protein, at 327,761 to 328,384
_RS01555
ABZR87_RS01560: ABZR87_RS01560 - ribonuclease domain-containing protein, at 328,381 to 328,812
_RS01560
ABZR87_RS01565: ABZR87_RS01565 - NADP-dependent malic enzyme, at 329,286 to 331,631
_RS01565
Position (kb) 327
328
329 Strain fitness (log2 ratio) -2
-1
0
1
2 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.975 kb on + strand, within ABZR87_RS01550 at 326.976 kb on - strand, within ABZR87_RS01550 at 327.054 kb on + strand, within ABZR87_RS01550 at 327.055 kb on - strand, within ABZR87_RS01550 at 327.198 kb on + strand, within ABZR87_RS01550 at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.579 kb on + strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.580 kb on - strand at 327.585 kb on + strand at 327.585 kb on + strand at 327.586 kb on - strand at 327.586 kb on - strand at 327.586 kb on - strand at 328.294 kb on - strand, within ABZR87_RS01555 at 328.294 kb on - strand, within ABZR87_RS01555 at 328.390 kb on + strand at 328.409 kb on + strand at 328.409 kb on + strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.410 kb on - strand at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.425 kb on - strand, within ABZR87_RS01560 at 328.427 kb on + strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.428 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.521 kb on - strand, within ABZR87_RS01560 at 328.556 kb on + strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.557 kb on - strand, within ABZR87_RS01560 at 328.586 kb on + strand, within ABZR87_RS01560 at 328.587 kb on - strand, within ABZR87_RS01560 at 328.774 kb on + strand at 328.775 kb on - strand at 328.775 kb on - strand at 328.775 kb on - strand at 328.884 kb on + strand at 328.885 kb on - strand at 328.885 kb on - strand at 329.354 kb on + strand at 329.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 326,975 + ABZR87_RS01550 0.32 +0.1 326,975 + ABZR87_RS01550 0.32 -0.5 326,975 + ABZR87_RS01550 0.32 -0.6 326,976 - ABZR87_RS01550 0.32 +0.3 327,054 + ABZR87_RS01550 0.40 +0.6 327,055 - ABZR87_RS01550 0.40 -1.8 327,198 + ABZR87_RS01550 0.54 -1.4 327,579 + +0.1 327,579 + +0.9 327,579 + -1.4 327,579 + -1.8 327,579 + -0.9 327,579 + +1.7 327,579 + +0.9 327,579 + -0.2 327,579 + +0.3 327,579 + +1.6 327,579 + +0.2 327,579 + +0.2 327,580 - -0.3 327,580 - -1.0 327,580 - -0.5 327,580 - -0.2 327,580 - -0.7 327,580 - +0.9 327,585 + -1.3 327,585 + -0.4 327,586 - -0.8 327,586 - +0.8 327,586 - -2.0 328,294 - ABZR87_RS01555 0.85 -0.3 328,294 - ABZR87_RS01555 0.85 -0.4 328,390 + +2.1 328,409 + +1.7 328,409 + +0.4 328,410 - -0.2 328,410 - +1.4 328,410 - -2.5 328,425 - ABZR87_RS01560 0.10 +1.5 328,425 - ABZR87_RS01560 0.10 +0.0 328,425 - ABZR87_RS01560 0.10 +1.2 328,425 - ABZR87_RS01560 0.10 +0.7 328,425 - ABZR87_RS01560 0.10 -0.1 328,427 + ABZR87_RS01560 0.11 +1.1 328,428 - ABZR87_RS01560 0.11 +0.6 328,428 - ABZR87_RS01560 0.11 +0.5 328,521 - ABZR87_RS01560 0.32 +1.0 328,521 - ABZR87_RS01560 0.32 +1.0 328,556 + ABZR87_RS01560 0.41 +1.1 328,557 - ABZR87_RS01560 0.41 +0.8 328,557 - ABZR87_RS01560 0.41 +1.7 328,557 - ABZR87_RS01560 0.41 -0.1 328,586 + ABZR87_RS01560 0.47 +0.1 328,587 - ABZR87_RS01560 0.48 +0.6 328,774 + -0.8 328,775 - +0.6 328,775 - +0.6 328,775 - +1.8 328,884 + -2.5 328,885 - -0.5 328,885 - -1.6 329,354 + +0.8 329,355 - +1.5
Or see this region's nucleotide sequence