Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01370

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01365 and ABZR87_RS01370 are separated by 19 nucleotidesABZR87_RS01370 and ABZR87_RS01375 are separated by 7 nucleotides ABZR87_RS01365: ABZR87_RS01365 - class I SAM-dependent methyltransferase PhcB, at 284,851 to 286,263 _RS01365 ABZR87_RS01370: ABZR87_RS01370 - ATP-binding protein, at 286,283 to 287,611 _RS01370 ABZR87_RS01375: ABZR87_RS01375 - two-component system hybrid sensor histidine kinase/response regulator PhcR, at 287,619 to 288,725 _RS01375 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1 2at 285.376 kb on + strand, within ABZR87_RS01365at 285.376 kb on + strand, within ABZR87_RS01365at 285.376 kb on + strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.377 kb on - strand, within ABZR87_RS01365at 285.490 kb on + strand, within ABZR87_RS01365at 285.490 kb on + strand, within ABZR87_RS01365at 285.490 kb on + strand, within ABZR87_RS01365at 285.490 kb on + strand, within ABZR87_RS01365at 285.491 kb on - strand, within ABZR87_RS01365at 285.491 kb on - strand, within ABZR87_RS01365at 285.491 kb on - strand, within ABZR87_RS01365at 285.499 kb on + strand, within ABZR87_RS01365at 285.499 kb on + strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.500 kb on - strand, within ABZR87_RS01365at 285.517 kb on + strand, within ABZR87_RS01365at 285.529 kb on + strand, within ABZR87_RS01365at 285.530 kb on - strand, within ABZR87_RS01365at 285.580 kb on + strand, within ABZR87_RS01365at 285.580 kb on + strand, within ABZR87_RS01365at 285.580 kb on + strand, within ABZR87_RS01365at 285.580 kb on + strand, within ABZR87_RS01365at 285.581 kb on - strand, within ABZR87_RS01365at 285.581 kb on - strand, within ABZR87_RS01365at 285.661 kb on + strand, within ABZR87_RS01365at 285.661 kb on + strand, within ABZR87_RS01365at 285.662 kb on - strand, within ABZR87_RS01365at 285.662 kb on - strand, within ABZR87_RS01365at 285.662 kb on - strand, within ABZR87_RS01365at 285.826 kb on + strand, within ABZR87_RS01365at 285.826 kb on + strand, within ABZR87_RS01365at 285.826 kb on + strand, within ABZR87_RS01365at 285.826 kb on + strand, within ABZR87_RS01365at 285.827 kb on - strand, within ABZR87_RS01365at 285.967 kb on + strand, within ABZR87_RS01365at 285.967 kb on + strand, within ABZR87_RS01365at 285.968 kb on - strand, within ABZR87_RS01365at 285.968 kb on - strand, within ABZR87_RS01365at 285.968 kb on - strand, within ABZR87_RS01365at 285.968 kb on - strand, within ABZR87_RS01365at 285.988 kb on + strand, within ABZR87_RS01365at 285.988 kb on + strand, within ABZR87_RS01365at 285.989 kb on - strand, within ABZR87_RS01365at 285.989 kb on - strand, within ABZR87_RS01365at 285.989 kb on - strand, within ABZR87_RS01365at 286.025 kb on - strand, within ABZR87_RS01365at 286.123 kb on + strandat 286.123 kb on + strandat 286.124 kb on - strandat 286.124 kb on - strandat 286.192 kb on + strandat 286.194 kb on + strandat 286.217 kb on + strandat 286.217 kb on + strandat 286.217 kb on + strandat 286.218 kb on - strandat 286.261 kb on + strandat 286.294 kb on + strandat 286.294 kb on + strandat 286.295 kb on - strandat 286.401 kb on - strandat 286.409 kb on + strandat 286.409 kb on + strandat 286.409 kb on + strandat 286.409 kb on + strandat 286.409 kb on + strandat 286.409 kb on + strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.410 kb on - strandat 286.487 kb on + strand, within ABZR87_RS01370at 286.488 kb on - strand, within ABZR87_RS01370at 286.488 kb on - strand, within ABZR87_RS01370at 286.488 kb on - strand, within ABZR87_RS01370at 286.571 kb on + strand, within ABZR87_RS01370at 286.571 kb on + strand, within ABZR87_RS01370at 286.572 kb on - strand, within ABZR87_RS01370at 286.572 kb on - strand, within ABZR87_RS01370at 286.572 kb on - strand, within ABZR87_RS01370at 286.572 kb on - strand, within ABZR87_RS01370at 286.598 kb on + strand, within ABZR87_RS01370at 286.598 kb on + strand, within ABZR87_RS01370at 286.598 kb on + strand, within ABZR87_RS01370at 286.598 kb on + strand, within ABZR87_RS01370at 286.599 kb on - strand, within ABZR87_RS01370at 286.599 kb on - strand, within ABZR87_RS01370at 286.599 kb on - strand, within ABZR87_RS01370at 286.599 kb on - strand, within ABZR87_RS01370at 286.601 kb on + strand, within ABZR87_RS01370at 286.601 kb on + strand, within ABZR87_RS01370at 286.601 kb on + strand, within ABZR87_RS01370at 286.625 kb on + strand, within ABZR87_RS01370at 286.625 kb on + strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.626 kb on - strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.688 kb on + strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.689 kb on - strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.799 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.805 kb on + strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 286.806 kb on - strand, within ABZR87_RS01370at 287.132 kb on + strand, within ABZR87_RS01370at 287.133 kb on - strand, within ABZR87_RS01370at 287.295 kb on + strand, within ABZR87_RS01370at 287.296 kb on - strand, within ABZR87_RS01370at 287.517 kb on - strandat 287.652 kb on + strandat 287.653 kb on - strandat 287.653 kb on - strandat 287.709 kb on + strandat 287.883 kb on + strand, within ABZR87_RS01375at 287.883 kb on + strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.884 kb on - strand, within ABZR87_RS01375at 287.952 kb on + strand, within ABZR87_RS01375at 287.953 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.205 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.253 kb on - strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.321 kb on + strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.322 kb on - strand, within ABZR87_RS01375at 288.357 kb on + strand, within ABZR87_RS01375

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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285,376 + ABZR87_RS01365 0.37 -0.4
285,376 + ABZR87_RS01365 0.37 -0.5
285,376 + ABZR87_RS01365 0.37 +0.0
285,377 - ABZR87_RS01365 0.37 -0.2
285,377 - ABZR87_RS01365 0.37 +0.2
285,377 - ABZR87_RS01365 0.37 +1.7
285,377 - ABZR87_RS01365 0.37 +0.4
285,377 - ABZR87_RS01365 0.37 -0.0
285,377 - ABZR87_RS01365 0.37 +1.1
285,490 + ABZR87_RS01365 0.45 -1.5
285,490 + ABZR87_RS01365 0.45 -1.3
285,490 + ABZR87_RS01365 0.45 +0.4
285,490 + ABZR87_RS01365 0.45 -1.0
285,491 - ABZR87_RS01365 0.45 +0.0
285,491 - ABZR87_RS01365 0.45 +0.3
285,491 - ABZR87_RS01365 0.45 +0.5
285,499 + ABZR87_RS01365 0.46 +0.7
285,499 + ABZR87_RS01365 0.46 -0.2
285,500 - ABZR87_RS01365 0.46 -1.2
285,500 - ABZR87_RS01365 0.46 +0.3
285,500 - ABZR87_RS01365 0.46 -0.2
285,500 - ABZR87_RS01365 0.46 +0.7
285,500 - ABZR87_RS01365 0.46 -0.6
285,500 - ABZR87_RS01365 0.46 +0.1
285,517 + ABZR87_RS01365 0.47 +0.7
285,529 + ABZR87_RS01365 0.48 -0.2
285,530 - ABZR87_RS01365 0.48 +0.2
285,580 + ABZR87_RS01365 0.52 -0.0
285,580 + ABZR87_RS01365 0.52 -0.0
285,580 + ABZR87_RS01365 0.52 -0.5
285,580 + ABZR87_RS01365 0.52 -0.3
285,581 - ABZR87_RS01365 0.52 +0.0
285,581 - ABZR87_RS01365 0.52 +0.4
285,661 + ABZR87_RS01365 0.57 -2.3
285,661 + ABZR87_RS01365 0.57 -0.8
285,662 - ABZR87_RS01365 0.57 +0.7
285,662 - ABZR87_RS01365 0.57 -0.8
285,662 - ABZR87_RS01365 0.57 -0.2
285,826 + ABZR87_RS01365 0.69 -1.7
285,826 + ABZR87_RS01365 0.69 +0.3
285,826 + ABZR87_RS01365 0.69 -1.0
285,826 + ABZR87_RS01365 0.69 +0.4
285,827 - ABZR87_RS01365 0.69 +0.2
285,967 + ABZR87_RS01365 0.79 -0.2
285,967 + ABZR87_RS01365 0.79 -0.6
285,968 - ABZR87_RS01365 0.79 -0.4
285,968 - ABZR87_RS01365 0.79 -0.2
285,968 - ABZR87_RS01365 0.79 -0.1
285,968 - ABZR87_RS01365 0.79 +0.4
285,988 + ABZR87_RS01365 0.80 -1.9
285,988 + ABZR87_RS01365 0.80 +0.2
285,989 - ABZR87_RS01365 0.81 -0.4
285,989 - ABZR87_RS01365 0.81 -0.0
285,989 - ABZR87_RS01365 0.81 -0.3
286,025 - ABZR87_RS01365 0.83 +0.8
286,123 + -0.3
286,123 + -0.6
286,124 - +0.6
286,124 - -0.4
286,192 + -0.9
286,194 + +0.7
286,217 + -2.0
286,217 + +1.7
286,217 + +0.2
286,218 - -0.4
286,261 + +0.6
286,294 + +0.8
286,294 + +0.2
286,295 - -0.1
286,401 - -0.0
286,409 + -0.0
286,409 + -1.5
286,409 + +0.2
286,409 + -0.1
286,409 + +0.6
286,409 + +1.2
286,410 - +0.1
286,410 - -0.5
286,410 - -0.6
286,410 - -0.3
286,410 - -0.2
286,410 - -2.0
286,410 - +0.3
286,410 - +0.3
286,410 - -0.1
286,487 + ABZR87_RS01370 0.15 +0.7
286,488 - ABZR87_RS01370 0.15 +0.5
286,488 - ABZR87_RS01370 0.15 -2.0
286,488 - ABZR87_RS01370 0.15 +0.4
286,571 + ABZR87_RS01370 0.22 +0.3
286,571 + ABZR87_RS01370 0.22 +1.7
286,572 - ABZR87_RS01370 0.22 +0.7
286,572 - ABZR87_RS01370 0.22 +0.1
286,572 - ABZR87_RS01370 0.22 +0.5
286,572 - ABZR87_RS01370 0.22 +0.0
286,598 + ABZR87_RS01370 0.24 +0.7
286,598 + ABZR87_RS01370 0.24 +1.7
286,598 + ABZR87_RS01370 0.24 -0.5
286,598 + ABZR87_RS01370 0.24 -0.9
286,599 - ABZR87_RS01370 0.24 -0.6
286,599 - ABZR87_RS01370 0.24 -0.8
286,599 - ABZR87_RS01370 0.24 -0.7
286,599 - ABZR87_RS01370 0.24 -0.8
286,601 + ABZR87_RS01370 0.24 -1.4
286,601 + ABZR87_RS01370 0.24 -1.1
286,601 + ABZR87_RS01370 0.24 +0.3
286,625 + ABZR87_RS01370 0.26 +0.6
286,625 + ABZR87_RS01370 0.26 +1.1
286,626 - ABZR87_RS01370 0.26 -1.2
286,626 - ABZR87_RS01370 0.26 +0.2
286,688 + ABZR87_RS01370 0.30 -0.4
286,688 + ABZR87_RS01370 0.30 +0.6
286,688 + ABZR87_RS01370 0.30 -0.4
286,688 + ABZR87_RS01370 0.30 +0.3
286,688 + ABZR87_RS01370 0.30 -0.5
286,689 - ABZR87_RS01370 0.31 +0.4
286,689 - ABZR87_RS01370 0.31 +0.2
286,689 - ABZR87_RS01370 0.31 +0.4
286,689 - ABZR87_RS01370 0.31 +0.0
286,689 - ABZR87_RS01370 0.31 -0.7
286,689 - ABZR87_RS01370 0.31 -0.3
286,689 - ABZR87_RS01370 0.31 +0.4
286,689 - ABZR87_RS01370 0.31 -1.2
286,689 - ABZR87_RS01370 0.31 +0.3
286,689 - ABZR87_RS01370 0.31 +0.2
286,799 + ABZR87_RS01370 0.39 +0.4
286,799 + ABZR87_RS01370 0.39 +0.6
286,799 + ABZR87_RS01370 0.39 +1.8
286,799 + ABZR87_RS01370 0.39 -1.0
286,805 + ABZR87_RS01370 0.39 +0.1
286,805 + ABZR87_RS01370 0.39 -0.4
286,805 + ABZR87_RS01370 0.39 -0.7
286,805 + ABZR87_RS01370 0.39 +0.0
286,806 - ABZR87_RS01370 0.39 +0.4
286,806 - ABZR87_RS01370 0.39 +0.8
286,806 - ABZR87_RS01370 0.39 +0.4
286,806 - ABZR87_RS01370 0.39 -0.2
286,806 - ABZR87_RS01370 0.39 -1.4
286,806 - ABZR87_RS01370 0.39 +0.2
286,806 - ABZR87_RS01370 0.39 -0.5
287,132 + ABZR87_RS01370 0.64 +0.2
287,133 - ABZR87_RS01370 0.64 -0.2
287,295 + ABZR87_RS01370 0.76 +0.1
287,296 - ABZR87_RS01370 0.76 -0.2
287,517 - -1.0
287,652 + -0.5
287,653 - +0.7
287,653 - +0.1
287,709 + -0.9
287,883 + ABZR87_RS01375 0.24 +0.1
287,883 + ABZR87_RS01375 0.24 +0.2
287,884 - ABZR87_RS01375 0.24 -0.4
287,884 - ABZR87_RS01375 0.24 -0.3
287,884 - ABZR87_RS01375 0.24 -0.5
287,884 - ABZR87_RS01375 0.24 +0.4
287,952 + ABZR87_RS01375 0.30 +0.1
287,953 - ABZR87_RS01375 0.30 +0.3
288,205 - ABZR87_RS01375 0.53 +0.2
288,205 - ABZR87_RS01375 0.53 +0.6
288,253 - ABZR87_RS01375 0.57 +0.0
288,253 - ABZR87_RS01375 0.57 -0.0
288,321 + ABZR87_RS01375 0.63 -0.4
288,321 + ABZR87_RS01375 0.63 -0.5
288,321 + ABZR87_RS01375 0.63 -0.8
288,321 + ABZR87_RS01375 0.63 -0.6
288,322 - ABZR87_RS01375 0.64 +0.2
288,322 - ABZR87_RS01375 0.64 +0.5
288,357 + ABZR87_RS01375 0.67 +0.6

Or see this region's nucleotide sequence