Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01030 and ABZR87_RS01035 are separated by 154 nucleotides ABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotides ABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotides ABZR87_RS01045 and ABZR87_RS01050 overlap by 4 nucleotides
ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117
_RS01030
ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985
_RS01035
ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862
_RS01040
ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650
_RS01045
ABZR87_RS01050: ABZR87_RS01050 - taurine ABC transporter substrate-binding protein, at 209,647 to 210,711
_RS01050
Position (kb) 207
208
209 Strain fitness (log2 ratio) -1
0
1
2 at 207.071 kb on + strand at 207.072 kb on - strand at 207.169 kb on + strand at 207.198 kb on + strand at 207.198 kb on + strand at 207.199 kb on - strand at 207.199 kb on - strand at 207.199 kb on - strand at 207.506 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.740 kb on + strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.741 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.780 kb on - strand, within ABZR87_RS01035 at 207.816 kb on - strand, within ABZR87_RS01035 at 208.288 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.369 kb on + strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.370 kb on - strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.429 kb on + strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.430 kb on - strand, within ABZR87_RS01040 at 208.453 kb on + strand, within ABZR87_RS01040 at 208.521 kb on + strand, within ABZR87_RS01040 at 208.522 kb on - strand, within ABZR87_RS01040 at 208.726 kb on - strand, within ABZR87_RS01040 at 208.901 kb on + strand at 208.902 kb on - strand at 209.234 kb on - strand, within ABZR87_RS01045 at 209.250 kb on + strand, within ABZR87_RS01045 at 209.250 kb on + strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.251 kb on - strand, within ABZR87_RS01045 at 209.613 kb on + strand at 209.613 kb on + strand at 209.613 kb on + strand at 209.614 kb on - strand at 209.726 kb on + strand at 209.727 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 207,071 + -0.6 207,072 - -1.4 207,169 + -1.6 207,198 + -0.2 207,198 + +0.6 207,199 - +1.0 207,199 - +1.0 207,199 - +1.0 207,506 + ABZR87_RS01035 0.33 -1.0 207,740 + ABZR87_RS01035 0.66 +1.2 207,740 + ABZR87_RS01035 0.66 +0.7 207,740 + ABZR87_RS01035 0.66 +1.9 207,741 - ABZR87_RS01035 0.66 +1.3 207,741 - ABZR87_RS01035 0.66 +1.7 207,741 - ABZR87_RS01035 0.66 +2.2 207,741 - ABZR87_RS01035 0.66 +2.5 207,780 - ABZR87_RS01035 0.71 +1.4 207,780 - ABZR87_RS01035 0.71 +2.0 207,780 - ABZR87_RS01035 0.71 +1.8 207,816 - ABZR87_RS01035 0.76 +2.7 208,288 + ABZR87_RS01040 0.34 -1.4 208,369 + ABZR87_RS01040 0.43 +0.9 208,369 + ABZR87_RS01040 0.43 +0.3 208,369 + ABZR87_RS01040 0.43 +0.2 208,369 + ABZR87_RS01040 0.43 -0.3 208,370 - ABZR87_RS01040 0.43 +0.0 208,370 - ABZR87_RS01040 0.43 -1.4 208,370 - ABZR87_RS01040 0.43 -0.0 208,370 - ABZR87_RS01040 0.43 +1.2 208,429 + ABZR87_RS01040 0.50 -0.3 208,429 + ABZR87_RS01040 0.50 +0.4 208,429 + ABZR87_RS01040 0.50 +0.2 208,430 - ABZR87_RS01040 0.50 +0.1 208,430 - ABZR87_RS01040 0.50 +0.7 208,430 - ABZR87_RS01040 0.50 +1.0 208,453 + ABZR87_RS01040 0.53 -0.1 208,521 + ABZR87_RS01040 0.61 -0.2 208,522 - ABZR87_RS01040 0.61 -0.6 208,726 - ABZR87_RS01040 0.84 -0.1 208,901 + -1.4 208,902 - +0.5 209,234 - ABZR87_RS01045 0.47 +1.1 209,250 + ABZR87_RS01045 0.49 -1.1 209,250 + ABZR87_RS01045 0.49 +0.4 209,251 - ABZR87_RS01045 0.49 -0.0 209,251 - ABZR87_RS01045 0.49 -1.3 209,251 - ABZR87_RS01045 0.49 -0.3 209,613 + -1.0 209,613 + -0.4 209,613 + +0.2 209,614 - -0.6 209,726 + -0.9 209,727 - -0.8
Or see this region's nucleotide sequence