Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01035

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01030 and ABZR87_RS01035 are separated by 154 nucleotidesABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotidesABZR87_RS01040 and ABZR87_RS01045 overlap by 4 nucleotides ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117 _RS01030 ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985 _RS01035 ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862 _RS01040 ABZR87_RS01045: ABZR87_RS01045 - ATP-binding cassette domain-containing protein, at 208,859 to 209,650 _RS01045 Position (kb) 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 206.431 kb on + strand, within ABZR87_RS01030at 206.434 kb on - strand, within ABZR87_RS01030at 206.434 kb on - strand, within ABZR87_RS01030at 206.464 kb on - strand, within ABZR87_RS01030at 206.464 kb on - strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.607 kb on - strand, within ABZR87_RS01030at 206.607 kb on - strand, within ABZR87_RS01030at 206.639 kb on + strand, within ABZR87_RS01030at 206.639 kb on + strand, within ABZR87_RS01030at 206.640 kb on - strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.673 kb on - strand, within ABZR87_RS01030at 206.673 kb on - strand, within ABZR87_RS01030at 206.702 kb on + strand, within ABZR87_RS01030at 206.702 kb on + strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.934 kb on - strand, within ABZR87_RS01030at 207.071 kb on + strandat 207.072 kb on - strandat 207.169 kb on + strandat 207.198 kb on + strandat 207.198 kb on + strandat 207.199 kb on - strandat 207.199 kb on - strandat 207.199 kb on - strandat 207.506 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.816 kb on - strand, within ABZR87_RS01035at 208.288 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.369 kb on + strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.370 kb on - strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.429 kb on + strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.430 kb on - strand, within ABZR87_RS01040at 208.453 kb on + strand, within ABZR87_RS01040at 208.521 kb on + strand, within ABZR87_RS01040at 208.522 kb on - strand, within ABZR87_RS01040at 208.726 kb on - strand, within ABZR87_RS01040at 208.901 kb on + strandat 208.902 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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206,431 + ABZR87_RS01030 0.60 +1.7
206,434 - ABZR87_RS01030 0.60 -0.6
206,434 - ABZR87_RS01030 0.60 +0.4
206,464 - ABZR87_RS01030 0.62 +0.1
206,464 - ABZR87_RS01030 0.62 -1.4
206,606 + ABZR87_RS01030 0.70 +0.6
206,606 + ABZR87_RS01030 0.70 -2.1
206,606 + ABZR87_RS01030 0.70 -0.1
206,607 - ABZR87_RS01030 0.70 +0.3
206,607 - ABZR87_RS01030 0.70 +0.0
206,639 + ABZR87_RS01030 0.72 -1.3
206,639 + ABZR87_RS01030 0.72 +0.1
206,640 - ABZR87_RS01030 0.72 +0.1
206,672 + ABZR87_RS01030 0.74 +1.3
206,672 + ABZR87_RS01030 0.74 -0.8
206,672 + ABZR87_RS01030 0.74 -0.3
206,673 - ABZR87_RS01030 0.74 +1.3
206,673 - ABZR87_RS01030 0.74 -0.4
206,702 + ABZR87_RS01030 0.76 -0.9
206,702 + ABZR87_RS01030 0.76 -0.1
206,703 - ABZR87_RS01030 0.76 -0.8
206,703 - ABZR87_RS01030 0.76 +0.5
206,703 - ABZR87_RS01030 0.76 -0.1
206,934 - ABZR87_RS01030 0.89 -1.0
207,071 + -0.6
207,072 - -1.4
207,169 + -1.6
207,198 + -0.2
207,198 + +0.6
207,199 - +1.0
207,199 - +1.0
207,199 - +1.0
207,506 + ABZR87_RS01035 0.33 -1.0
207,740 + ABZR87_RS01035 0.66 +1.2
207,740 + ABZR87_RS01035 0.66 +0.7
207,740 + ABZR87_RS01035 0.66 +1.9
207,741 - ABZR87_RS01035 0.66 +1.3
207,741 - ABZR87_RS01035 0.66 +1.7
207,741 - ABZR87_RS01035 0.66 +2.2
207,741 - ABZR87_RS01035 0.66 +2.5
207,780 - ABZR87_RS01035 0.71 +1.4
207,780 - ABZR87_RS01035 0.71 +2.0
207,780 - ABZR87_RS01035 0.71 +1.8
207,816 - ABZR87_RS01035 0.76 +2.7
208,288 + ABZR87_RS01040 0.34 -1.4
208,369 + ABZR87_RS01040 0.43 +0.9
208,369 + ABZR87_RS01040 0.43 +0.3
208,369 + ABZR87_RS01040 0.43 +0.2
208,369 + ABZR87_RS01040 0.43 -0.3
208,370 - ABZR87_RS01040 0.43 +0.0
208,370 - ABZR87_RS01040 0.43 -1.4
208,370 - ABZR87_RS01040 0.43 -0.0
208,370 - ABZR87_RS01040 0.43 +1.2
208,429 + ABZR87_RS01040 0.50 -0.3
208,429 + ABZR87_RS01040 0.50 +0.4
208,429 + ABZR87_RS01040 0.50 +0.2
208,430 - ABZR87_RS01040 0.50 +0.1
208,430 - ABZR87_RS01040 0.50 +0.7
208,430 - ABZR87_RS01040 0.50 +1.0
208,453 + ABZR87_RS01040 0.53 -0.1
208,521 + ABZR87_RS01040 0.61 -0.2
208,522 - ABZR87_RS01040 0.61 -0.6
208,726 - ABZR87_RS01040 0.84 -0.1
208,901 + -1.4
208,902 - +0.5

Or see this region's nucleotide sequence