Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01010

Experiment: Ra1_0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00995 and ABZR87_RS01000 are separated by 262 nucleotidesABZR87_RS01000 and ABZR87_RS01005 are separated by 21 nucleotidesABZR87_RS01005 and ABZR87_RS01010 overlap by 4 nucleotidesABZR87_RS01010 and ABZR87_RS01015 are separated by 56 nucleotides ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560 _RS00995 ABZR87_RS01000: ABZR87_RS01000 - hypothetical protein, at 199,823 to 200,020 _RS01000 ABZR87_RS01005: ABZR87_RS01005 - RNA-binding S4 domain-containing protein, at 200,042 to 200,440 _RS01005 ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552 _RS01010 ABZR87_RS01015: ABZR87_RS01015 - imidazolonepropionase, at 201,609 to 202,844 _RS01015 Position (kb) 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3at 199.560 kb on + strandat 199.560 kb on + strandat 199.560 kb on + strandat 199.560 kb on + strandat 199.561 kb on - strandat 199.571 kb on - strandat 199.590 kb on + strandat 199.590 kb on + strandat 199.590 kb on + strandat 199.590 kb on + strandat 199.590 kb on + strandat 199.591 kb on - strandat 199.591 kb on - strandat 199.591 kb on - strandat 199.591 kb on - strandat 199.620 kb on + strandat 199.620 kb on + strandat 199.621 kb on - strandat 199.640 kb on + strandat 199.708 kb on + strandat 199.708 kb on + strandat 199.709 kb on - strandat 199.709 kb on - strandat 199.716 kb on + strandat 199.716 kb on + strandat 199.716 kb on + strandat 199.716 kb on + strandat 199.716 kb on + strandat 199.717 kb on - strandat 199.717 kb on - strandat 199.717 kb on - strandat 199.717 kb on - strandat 199.772 kb on + strandat 199.772 kb on + strandat 199.772 kb on + strandat 199.773 kb on - strandat 199.773 kb on - strandat 199.820 kb on - strandat 199.820 kb on - strandat 199.820 kb on - strandat 199.820 kb on - strandat 199.919 kb on + strand, within ABZR87_RS01000at 199.920 kb on - strand, within ABZR87_RS01000at 199.920 kb on - strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.921 kb on + strand, within ABZR87_RS01000at 199.922 kb on - strand, within ABZR87_RS01000at 199.922 kb on - strand, within ABZR87_RS01000at 199.922 kb on - strand, within ABZR87_RS01000at 199.929 kb on - strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.958 kb on + strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 199.959 kb on - strand, within ABZR87_RS01000at 200.010 kb on + strandat 200.011 kb on - strandat 200.018 kb on + strandat 200.018 kb on + strandat 200.019 kb on - strandat 200.156 kb on + strand, within ABZR87_RS01005at 200.181 kb on + strand, within ABZR87_RS01005at 200.181 kb on + strand, within ABZR87_RS01005at 200.181 kb on + strand, within ABZR87_RS01005at 201.570 kb on - strandat 201.582 kb on + strandat 201.582 kb on + strandat 201.584 kb on + strandat 201.584 kb on + strandat 201.584 kb on + strandat 201.584 kb on + strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.610 kb on + strandat 201.610 kb on + strandat 201.610 kb on + strandat 201.610 kb on + strandat 201.611 kb on - strandat 201.611 kb on - strandat 201.667 kb on + strandat 201.667 kb on + strandat 201.667 kb on + strandat 201.867 kb on - strand, within ABZR87_RS01015at 201.867 kb on - strand, within ABZR87_RS01015at 201.955 kb on + strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 201.956 kb on - strand, within ABZR87_RS01015at 202.257 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.261 kb on + strand, within ABZR87_RS01015at 202.262 kb on - strand, within ABZR87_RS01015at 202.262 kb on - strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015at 202.549 kb on + strand, within ABZR87_RS01015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
remove
199,560 + +2.7
199,560 + +2.6
199,560 + +2.3
199,560 + +2.9
199,561 - -0.8
199,571 - -1.9
199,590 + +1.8
199,590 + +0.9
199,590 + +1.3
199,590 + +1.9
199,590 + +2.5
199,591 - +1.0
199,591 - -0.0
199,591 - +1.2
199,591 - +0.4
199,620 + +0.8
199,620 + +1.4
199,621 - -1.2
199,640 + -0.1
199,708 + +0.1
199,708 + -0.5
199,709 - +0.4
199,709 - +0.4
199,716 + +0.6
199,716 + -1.5
199,716 + -0.2
199,716 + -0.6
199,716 + -0.4
199,717 - +0.3
199,717 - +0.7
199,717 - -0.1
199,717 - +1.2
199,772 + -1.1
199,772 + -1.3
199,772 + +0.2
199,773 - +0.9
199,773 - -0.3
199,820 - +0.8
199,820 - +0.0
199,820 - +0.9
199,820 - -1.4
199,919 + ABZR87_RS01000 0.48 +0.8
199,920 - ABZR87_RS01000 0.49 +0.4
199,920 - ABZR87_RS01000 0.49 +0.5
199,921 + ABZR87_RS01000 0.49 +0.4
199,921 + ABZR87_RS01000 0.49 -0.6
199,921 + ABZR87_RS01000 0.49 +0.3
199,921 + ABZR87_RS01000 0.49 -0.2
199,921 + ABZR87_RS01000 0.49 -0.6
199,921 + ABZR87_RS01000 0.49 +0.7
199,921 + ABZR87_RS01000 0.49 +0.2
199,922 - ABZR87_RS01000 0.50 +0.7
199,922 - ABZR87_RS01000 0.50 +1.6
199,922 - ABZR87_RS01000 0.50 -0.0
199,929 - ABZR87_RS01000 0.54 -0.5
199,958 + ABZR87_RS01000 0.68 -1.4
199,958 + ABZR87_RS01000 0.68 +0.1
199,958 + ABZR87_RS01000 0.68 +0.4
199,958 + ABZR87_RS01000 0.68 -0.5
199,958 + ABZR87_RS01000 0.68 +0.3
199,958 + ABZR87_RS01000 0.68 +1.1
199,958 + ABZR87_RS01000 0.68 -1.3
199,958 + ABZR87_RS01000 0.68 -1.0
199,958 + ABZR87_RS01000 0.68 +1.2
199,958 + ABZR87_RS01000 0.68 -1.0
199,958 + ABZR87_RS01000 0.68 +2.1
199,959 - ABZR87_RS01000 0.69 +0.3
199,959 - ABZR87_RS01000 0.69 +0.5
199,959 - ABZR87_RS01000 0.69 +0.2
199,959 - ABZR87_RS01000 0.69 -0.5
199,959 - ABZR87_RS01000 0.69 -1.8
199,959 - ABZR87_RS01000 0.69 +1.5
200,010 + +0.2
200,011 - +0.9
200,018 + +0.0
200,018 + -0.0
200,019 - +0.0
200,156 + ABZR87_RS01005 0.29 -0.2
200,181 + ABZR87_RS01005 0.35 +0.3
200,181 + ABZR87_RS01005 0.35 +0.2
200,181 + ABZR87_RS01005 0.35 -1.3
201,570 - -0.3
201,582 + +0.7
201,582 + +1.1
201,584 + +0.9
201,584 + -1.6
201,584 + -0.6
201,584 + +0.7
201,585 - +0.6
201,585 - +0.4
201,585 - +0.5
201,610 + +0.2
201,610 + +0.3
201,610 + -0.5
201,610 + -0.5
201,611 - +1.0
201,611 - -0.8
201,667 + +0.5
201,667 + -0.8
201,667 + -0.9
201,867 - ABZR87_RS01015 0.21 -0.4
201,867 - ABZR87_RS01015 0.21 -1.0
201,955 + ABZR87_RS01015 0.28 -2.5
201,956 - ABZR87_RS01015 0.28 -1.1
201,956 - ABZR87_RS01015 0.28 -1.8
201,956 - ABZR87_RS01015 0.28 -0.7
201,956 - ABZR87_RS01015 0.28 -1.9
201,956 - ABZR87_RS01015 0.28 -0.0
202,257 + ABZR87_RS01015 0.52 -2.0
202,261 + ABZR87_RS01015 0.53 -0.4
202,261 + ABZR87_RS01015 0.53 -0.5
202,261 + ABZR87_RS01015 0.53 -1.2
202,261 + ABZR87_RS01015 0.53 -1.1
202,261 + ABZR87_RS01015 0.53 -0.6
202,261 + ABZR87_RS01015 0.53 +0.4
202,261 + ABZR87_RS01015 0.53 -1.4
202,261 + ABZR87_RS01015 0.53 +0.0
202,261 + ABZR87_RS01015 0.53 +1.1
202,261 + ABZR87_RS01015 0.53 -2.2
202,262 - ABZR87_RS01015 0.53 -2.1
202,262 - ABZR87_RS01015 0.53 +0.2
202,549 + ABZR87_RS01015 0.76 -0.7
202,549 + ABZR87_RS01015 0.76 -0.6
202,549 + ABZR87_RS01015 0.76 +0.4
202,549 + ABZR87_RS01015 0.76 +0.5

Or see this region's nucleotide sequence