Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00985 and ABZR87_RS00990 are separated by 329 nucleotides ABZR87_RS00990 and ABZR87_RS00995 are separated by 13 nucleotides ABZR87_RS00995 and ABZR87_RS01000 are separated by 262 nucleotides ABZR87_RS01000 and ABZR87_RS01005 are separated by 21 nucleotides ABZR87_RS01005 and ABZR87_RS01010 overlap by 4 nucleotides
ABZR87_RS00985: ABZR87_RS00985 - nucleoside diphosphate kinase regulator, at 197,737 to 198,144
_RS00985
ABZR87_RS00990: ABZR87_RS00990 - thioredoxin family protein, at 198,474 to 198,899
_RS00990
ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560
_RS00995
ABZR87_RS01000: ABZR87_RS01000 - hypothetical protein, at 199,823 to 200,020
_RS01000
ABZR87_RS01005: ABZR87_RS01005 - RNA-binding S4 domain-containing protein, at 200,042 to 200,440
_RS01005
ABZR87_RS01010: ABZR87_RS01010 - ferrochelatase, at 200,437 to 201,552
_RS01010
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.257 kb on + strand at 198.258 kb on + strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.259 kb on - strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.269 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.603 kb on - strand, within ABZR87_RS00990 at 198.603 kb on - strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.560 kb on + strand at 199.561 kb on - strand at 199.571 kb on - strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.590 kb on + strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.591 kb on - strand at 199.620 kb on + strand at 199.620 kb on + strand at 199.621 kb on - strand at 199.640 kb on + strand at 199.708 kb on + strand at 199.708 kb on + strand at 199.709 kb on - strand at 199.709 kb on - strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.716 kb on + strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.717 kb on - strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.772 kb on + strand at 199.773 kb on - strand at 199.773 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.820 kb on - strand at 199.919 kb on + strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.920 kb on - strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.921 kb on + strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.922 kb on - strand, within ABZR87_RS01000 at 199.929 kb on - strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.958 kb on + strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 199.959 kb on - strand, within ABZR87_RS01000 at 200.010 kb on + strand at 200.011 kb on - strand at 200.018 kb on + strand at 200.018 kb on + strand at 200.019 kb on - strand at 200.156 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005 at 200.181 kb on + strand, within ABZR87_RS01005
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 198,122 + -0.4 198,122 + +0.9 198,122 + +0.3 198,122 + +0.6 198,122 + -0.9 198,122 + +0.2 198,122 + -1.5 198,122 + +0.7 198,122 + -0.6 198,123 - -0.3 198,123 - +0.9 198,123 - -0.4 198,123 - -0.8 198,123 - +0.0 198,123 - -0.1 198,123 - -0.2 198,155 + -1.2 198,155 + +0.5 198,155 + +0.1 198,155 + -0.7 198,156 - +0.5 198,156 - -0.7 198,156 - -0.3 198,257 + +0.0 198,258 + +0.5 198,258 + +0.6 198,259 - +1.8 198,259 - +0.8 198,261 + +2.7 198,261 + -0.0 198,261 + -0.8 198,261 + -1.0 198,261 + +0.3 198,261 + +0.5 198,262 - +1.4 198,262 - +2.5 198,262 - +0.5 198,262 - +1.9 198,262 - +1.7 198,262 - -0.5 198,269 - +0.4 198,322 - +1.7 198,322 - +2.7 198,322 - +0.8 198,603 - ABZR87_RS00990 0.30 +0.5 198,603 - ABZR87_RS00990 0.30 +0.5 198,643 + ABZR87_RS00990 0.40 -1.5 198,643 + ABZR87_RS00990 0.40 -0.9 198,643 + ABZR87_RS00990 0.40 -0.4 198,643 + ABZR87_RS00990 0.40 +0.4 198,643 + ABZR87_RS00990 0.40 -1.7 198,644 - ABZR87_RS00990 0.40 -0.2 198,644 - ABZR87_RS00990 0.40 -1.1 198,644 - ABZR87_RS00990 0.40 -0.6 198,914 + +0.3 198,914 + +0.1 198,914 + +0.4 198,914 + -0.8 198,914 + +0.5 198,914 + -1.7 198,914 + -0.6 198,914 + -0.8 198,915 - -2.9 198,915 - -0.0 198,915 - -2.1 198,915 - -1.3 198,915 - +0.4 198,915 - -0.7 198,915 - -0.1 198,915 - -1.6 199,560 + +2.7 199,560 + +2.6 199,560 + +2.3 199,560 + +2.9 199,561 - -0.8 199,571 - -1.9 199,590 + +1.8 199,590 + +0.9 199,590 + +1.3 199,590 + +1.9 199,590 + +2.5 199,591 - +1.0 199,591 - -0.0 199,591 - +1.2 199,591 - +0.4 199,620 + +0.8 199,620 + +1.4 199,621 - -1.2 199,640 + -0.1 199,708 + +0.1 199,708 + -0.5 199,709 - +0.4 199,709 - +0.4 199,716 + +0.6 199,716 + -1.5 199,716 + -0.2 199,716 + -0.6 199,716 + -0.4 199,717 - +0.3 199,717 - +0.7 199,717 - -0.1 199,717 - +1.2 199,772 + -1.1 199,772 + -1.3 199,772 + +0.2 199,773 - +0.9 199,773 - -0.3 199,820 - +0.8 199,820 - +0.0 199,820 - +0.9 199,820 - -1.4 199,919 + ABZR87_RS01000 0.48 +0.8 199,920 - ABZR87_RS01000 0.49 +0.4 199,920 - ABZR87_RS01000 0.49 +0.5 199,921 + ABZR87_RS01000 0.49 +0.4 199,921 + ABZR87_RS01000 0.49 -0.6 199,921 + ABZR87_RS01000 0.49 +0.3 199,921 + ABZR87_RS01000 0.49 -0.2 199,921 + ABZR87_RS01000 0.49 -0.6 199,921 + ABZR87_RS01000 0.49 +0.7 199,921 + ABZR87_RS01000 0.49 +0.2 199,922 - ABZR87_RS01000 0.50 +0.7 199,922 - ABZR87_RS01000 0.50 +1.6 199,922 - ABZR87_RS01000 0.50 -0.0 199,929 - ABZR87_RS01000 0.54 -0.5 199,958 + ABZR87_RS01000 0.68 -1.4 199,958 + ABZR87_RS01000 0.68 +0.1 199,958 + ABZR87_RS01000 0.68 +0.4 199,958 + ABZR87_RS01000 0.68 -0.5 199,958 + ABZR87_RS01000 0.68 +0.3 199,958 + ABZR87_RS01000 0.68 +1.1 199,958 + ABZR87_RS01000 0.68 -1.3 199,958 + ABZR87_RS01000 0.68 -1.0 199,958 + ABZR87_RS01000 0.68 +1.2 199,958 + ABZR87_RS01000 0.68 -1.0 199,958 + ABZR87_RS01000 0.68 +2.1 199,959 - ABZR87_RS01000 0.69 +0.3 199,959 - ABZR87_RS01000 0.69 +0.5 199,959 - ABZR87_RS01000 0.69 +0.2 199,959 - ABZR87_RS01000 0.69 -0.5 199,959 - ABZR87_RS01000 0.69 -1.8 199,959 - ABZR87_RS01000 0.69 +1.5 200,010 + +0.2 200,011 - +0.9 200,018 + +0.0 200,018 + -0.0 200,019 - +0.0 200,156 + ABZR87_RS01005 0.29 -0.2 200,181 + ABZR87_RS01005 0.35 +0.3 200,181 + ABZR87_RS01005 0.35 +0.2 200,181 + ABZR87_RS01005 0.35 -1.3
Or see this region's nucleotide sequence