Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00980 and ABZR87_RS00985 are separated by 12 nucleotides ABZR87_RS00985 and ABZR87_RS00990 are separated by 329 nucleotides ABZR87_RS00990 and ABZR87_RS00995 are separated by 13 nucleotides
ABZR87_RS00980: ABZR87_RS00980 - phospholipase A, at 196,429 to 197,724
_RS00980
ABZR87_RS00985: ABZR87_RS00985 - nucleoside diphosphate kinase regulator, at 197,737 to 198,144
_RS00985
ABZR87_RS00990: ABZR87_RS00990 - thioredoxin family protein, at 198,474 to 198,899
_RS00990
ABZR87_RS00995: ABZR87_RS00995 - nucleotide exchange factor GrpE, at 198,913 to 199,560
_RS00995
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 196.953 kb on + strand, within ABZR87_RS00980 at 196.954 kb on - strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.155 kb on + strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.156 kb on - strand, within ABZR87_RS00980 at 197.217 kb on + strand, within ABZR87_RS00980 at 197.218 kb on - strand, within ABZR87_RS00980 at 197.218 kb on - strand, within ABZR87_RS00980 at 197.225 kb on - strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.242 kb on + strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.243 kb on - strand, within ABZR87_RS00980 at 197.245 kb on + strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.402 kb on - strand, within ABZR87_RS00980 at 197.428 kb on + strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.429 kb on - strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.434 kb on + strand, within ABZR87_RS00980 at 197.435 kb on - strand, within ABZR87_RS00980 at 197.471 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.501 kb on - strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.560 kb on + strand, within ABZR87_RS00980 at 197.561 kb on - strand, within ABZR87_RS00980 at 197.561 kb on - strand, within ABZR87_RS00980 at 197.623 kb on + strand at 197.623 kb on + strand at 197.639 kb on - strand at 197.671 kb on + strand at 197.671 kb on + strand at 197.708 kb on - strand at 197.738 kb on + strand at 197.738 kb on + strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.739 kb on - strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.745 kb on + strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.746 kb on - strand at 197.822 kb on + strand, within ABZR87_RS00985 at 197.823 kb on - strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.835 kb on + strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 197.836 kb on - strand, within ABZR87_RS00985 at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.122 kb on + strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.123 kb on - strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.155 kb on + strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.156 kb on - strand at 198.257 kb on + strand at 198.258 kb on + strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.259 kb on - strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.261 kb on + strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.262 kb on - strand at 198.269 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.322 kb on - strand at 198.603 kb on - strand, within ABZR87_RS00990 at 198.603 kb on - strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.643 kb on + strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.644 kb on - strand, within ABZR87_RS00990 at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.914 kb on + strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand at 198.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 196,953 + ABZR87_RS00980 0.40 +0.4 196,954 - ABZR87_RS00980 0.41 -1.2 197,155 + ABZR87_RS00980 0.56 -0.4 197,155 + ABZR87_RS00980 0.56 -1.4 197,155 + ABZR87_RS00980 0.56 -0.4 197,155 + ABZR87_RS00980 0.56 -0.7 197,155 + ABZR87_RS00980 0.56 +0.7 197,155 + ABZR87_RS00980 0.56 -0.5 197,155 + ABZR87_RS00980 0.56 +0.1 197,155 + ABZR87_RS00980 0.56 -0.1 197,155 + ABZR87_RS00980 0.56 -0.0 197,156 - ABZR87_RS00980 0.56 -0.2 197,156 - ABZR87_RS00980 0.56 +0.3 197,156 - ABZR87_RS00980 0.56 +0.3 197,156 - ABZR87_RS00980 0.56 +0.7 197,156 - ABZR87_RS00980 0.56 +0.4 197,217 + ABZR87_RS00980 0.61 +0.8 197,218 - ABZR87_RS00980 0.61 -0.6 197,218 - ABZR87_RS00980 0.61 -0.8 197,225 - ABZR87_RS00980 0.61 +0.6 197,242 + ABZR87_RS00980 0.63 +0.3 197,242 + ABZR87_RS00980 0.63 -0.5 197,242 + ABZR87_RS00980 0.63 -1.5 197,242 + ABZR87_RS00980 0.63 +0.4 197,242 + ABZR87_RS00980 0.63 -0.2 197,242 + ABZR87_RS00980 0.63 +0.6 197,243 - ABZR87_RS00980 0.63 -0.0 197,243 - ABZR87_RS00980 0.63 +0.0 197,243 - ABZR87_RS00980 0.63 +0.5 197,243 - ABZR87_RS00980 0.63 +0.6 197,243 - ABZR87_RS00980 0.63 +0.2 197,243 - ABZR87_RS00980 0.63 -1.5 197,243 - ABZR87_RS00980 0.63 +1.7 197,245 + ABZR87_RS00980 0.63 -2.1 197,402 - ABZR87_RS00980 0.75 +0.5 197,402 - ABZR87_RS00980 0.75 +0.1 197,402 - ABZR87_RS00980 0.75 -0.2 197,428 + ABZR87_RS00980 0.77 -0.4 197,429 - ABZR87_RS00980 0.77 +0.1 197,429 - ABZR87_RS00980 0.77 +1.4 197,429 - ABZR87_RS00980 0.77 +0.2 197,429 - ABZR87_RS00980 0.77 +0.4 197,434 + ABZR87_RS00980 0.78 +0.7 197,434 + ABZR87_RS00980 0.78 +0.0 197,434 + ABZR87_RS00980 0.78 +0.8 197,435 - ABZR87_RS00980 0.78 +0.1 197,471 - ABZR87_RS00980 0.80 -0.1 197,501 - ABZR87_RS00980 0.83 +0.7 197,501 - ABZR87_RS00980 0.83 -0.3 197,501 - ABZR87_RS00980 0.83 +0.8 197,560 + ABZR87_RS00980 0.87 -1.2 197,560 + ABZR87_RS00980 0.87 -0.3 197,560 + ABZR87_RS00980 0.87 +0.7 197,560 + ABZR87_RS00980 0.87 -0.2 197,560 + ABZR87_RS00980 0.87 +1.0 197,560 + ABZR87_RS00980 0.87 -1.2 197,560 + ABZR87_RS00980 0.87 +0.7 197,560 + ABZR87_RS00980 0.87 +2.1 197,561 - ABZR87_RS00980 0.87 -0.3 197,561 - ABZR87_RS00980 0.87 -0.8 197,623 + +0.1 197,623 + +1.0 197,639 - -0.5 197,671 + -0.9 197,671 + +0.6 197,708 - +0.3 197,738 + -0.9 197,738 + +0.4 197,739 - +0.4 197,739 - -0.7 197,739 - +0.0 197,739 - +0.7 197,739 - -0.5 197,739 - -0.7 197,745 + -2.4 197,745 + -0.6 197,745 + +0.7 197,745 + +0.8 197,745 + -1.1 197,746 - -2.9 197,746 - -1.8 197,746 - -0.1 197,746 - +0.1 197,746 - -0.6 197,746 - -0.7 197,746 - +0.1 197,746 - +0.0 197,822 + ABZR87_RS00985 0.21 -0.4 197,823 - ABZR87_RS00985 0.21 -0.3 197,835 + ABZR87_RS00985 0.24 -2.3 197,835 + ABZR87_RS00985 0.24 +1.5 197,835 + ABZR87_RS00985 0.24 -0.3 197,835 + ABZR87_RS00985 0.24 +1.2 197,835 + ABZR87_RS00985 0.24 -1.1 197,835 + ABZR87_RS00985 0.24 -1.7 197,836 - ABZR87_RS00985 0.24 -0.6 197,836 - ABZR87_RS00985 0.24 -0.8 197,836 - ABZR87_RS00985 0.24 +0.9 197,836 - ABZR87_RS00985 0.24 +2.3 198,122 + -0.4 198,122 + +0.9 198,122 + +0.3 198,122 + +0.6 198,122 + -0.9 198,122 + +0.2 198,122 + -1.5 198,122 + +0.7 198,122 + -0.6 198,123 - -0.3 198,123 - +0.9 198,123 - -0.4 198,123 - -0.8 198,123 - +0.0 198,123 - -0.1 198,123 - -0.2 198,155 + -1.2 198,155 + +0.5 198,155 + +0.1 198,155 + -0.7 198,156 - +0.5 198,156 - -0.7 198,156 - -0.3 198,257 + +0.0 198,258 + +0.5 198,258 + +0.6 198,259 - +1.8 198,259 - +0.8 198,261 + +2.7 198,261 + -0.0 198,261 + -0.8 198,261 + -1.0 198,261 + +0.3 198,261 + +0.5 198,262 - +1.4 198,262 - +2.5 198,262 - +0.5 198,262 - +1.9 198,262 - +1.7 198,262 - -0.5 198,269 - +0.4 198,322 - +1.7 198,322 - +2.7 198,322 - +0.8 198,603 - ABZR87_RS00990 0.30 +0.5 198,603 - ABZR87_RS00990 0.30 +0.5 198,643 + ABZR87_RS00990 0.40 -1.5 198,643 + ABZR87_RS00990 0.40 -0.9 198,643 + ABZR87_RS00990 0.40 -0.4 198,643 + ABZR87_RS00990 0.40 +0.4 198,643 + ABZR87_RS00990 0.40 -1.7 198,644 - ABZR87_RS00990 0.40 -0.2 198,644 - ABZR87_RS00990 0.40 -1.1 198,644 - ABZR87_RS00990 0.40 -0.6 198,914 + +0.3 198,914 + +0.1 198,914 + +0.4 198,914 + -0.8 198,914 + +0.5 198,914 + -1.7 198,914 + -0.6 198,914 + -0.8 198,915 - -2.9 198,915 - -0.0 198,915 - -2.1 198,915 - -1.3 198,915 - +0.4 198,915 - -0.7 198,915 - -0.1 198,915 - -1.6
Or see this region's nucleotide sequence