Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00935

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotidesABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotidesABZR87_RS00935 and ABZR87_RS00940 overlap by 4 nucleotidesABZR87_RS00940 and ABZR87_RS00945 are separated by 29 nucleotides ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156 _RS00925 ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882 _RS00930 ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456 _RS00935 ABZR87_RS00940: ABZR87_RS00940 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 187,453 to 187,968 _RS00940 ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642 _RS00945 Position (kb) 185 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 185.179 kb on + strandat 185.179 kb on + strandat 185.179 kb on + strandat 185.180 kb on - strandat 185.180 kb on - strandat 185.180 kb on - strandat 185.183 kb on + strandat 185.183 kb on + strandat 185.184 kb on - strandat 185.500 kb on - strand, within ABZR87_RS00930at 185.880 kb on + strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 185.881 kb on - strandat 186.146 kb on + strand, within ABZR87_RS00935at 186.308 kb on + strand, within ABZR87_RS00935at 186.309 kb on - strand, within ABZR87_RS00935at 186.527 kb on + strand, within ABZR87_RS00935at 186.527 kb on + strand, within ABZR87_RS00935at 186.528 kb on - strand, within ABZR87_RS00935at 186.528 kb on - strand, within ABZR87_RS00935at 186.530 kb on + strand, within ABZR87_RS00935at 186.530 kb on + strand, within ABZR87_RS00935at 186.530 kb on + strand, within ABZR87_RS00935at 186.530 kb on + strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.531 kb on - strand, within ABZR87_RS00935at 186.560 kb on + strand, within ABZR87_RS00935at 186.560 kb on + strand, within ABZR87_RS00935at 186.560 kb on + strand, within ABZR87_RS00935at 186.561 kb on - strand, within ABZR87_RS00935at 187.048 kb on + strand, within ABZR87_RS00935at 187.049 kb on - strand, within ABZR87_RS00935at 187.049 kb on - strand, within ABZR87_RS00935at 187.211 kb on + strand, within ABZR87_RS00935at 187.211 kb on + strand, within ABZR87_RS00935at 187.211 kb on + strand, within ABZR87_RS00935at 187.212 kb on - strand, within ABZR87_RS00935at 187.468 kb on + strandat 188.142 kb on + strand, within ABZR87_RS00945at 188.142 kb on + strand, within ABZR87_RS00945at 188.143 kb on - strand, within ABZR87_RS00945at 188.143 kb on - strand, within ABZR87_RS00945at 188.160 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.322 kb on + strand, within ABZR87_RS00945at 188.323 kb on - strand, within ABZR87_RS00945at 188.323 kb on - strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945at 188.436 kb on + strand, within ABZR87_RS00945

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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185,179 + -1.9
185,179 + -2.2
185,179 + -1.3
185,180 - +0.4
185,180 - +0.6
185,180 - +0.2
185,183 + -1.1
185,183 + -0.7
185,184 - +0.3
185,500 - ABZR87_RS00930 0.43 +3.3
185,880 + +2.4
185,881 - +2.1
185,881 - +2.7
185,881 - +2.5
185,881 - +2.7
186,146 + ABZR87_RS00935 0.16 +2.5
186,308 + ABZR87_RS00935 0.26 +2.5
186,309 - ABZR87_RS00935 0.27 +3.6
186,527 + ABZR87_RS00935 0.40 +2.3
186,527 + ABZR87_RS00935 0.40 +3.0
186,528 - ABZR87_RS00935 0.41 +3.2
186,528 - ABZR87_RS00935 0.41 +3.5
186,530 + ABZR87_RS00935 0.41 +3.0
186,530 + ABZR87_RS00935 0.41 +3.3
186,530 + ABZR87_RS00935 0.41 +4.1
186,530 + ABZR87_RS00935 0.41 +3.5
186,531 - ABZR87_RS00935 0.41 +2.5
186,531 - ABZR87_RS00935 0.41 +3.6
186,531 - ABZR87_RS00935 0.41 +3.2
186,531 - ABZR87_RS00935 0.41 +3.1
186,531 - ABZR87_RS00935 0.41 +3.3
186,531 - ABZR87_RS00935 0.41 +3.0
186,531 - ABZR87_RS00935 0.41 +2.3
186,531 - ABZR87_RS00935 0.41 +2.3
186,531 - ABZR87_RS00935 0.41 +3.5
186,531 - ABZR87_RS00935 0.41 +3.1
186,560 + ABZR87_RS00935 0.43 +3.7
186,560 + ABZR87_RS00935 0.43 +3.1
186,560 + ABZR87_RS00935 0.43 +2.6
186,561 - ABZR87_RS00935 0.43 +3.0
187,048 + ABZR87_RS00935 0.74 +2.8
187,049 - ABZR87_RS00935 0.74 +2.8
187,049 - ABZR87_RS00935 0.74 +2.4
187,211 + ABZR87_RS00935 0.84 +3.1
187,211 + ABZR87_RS00935 0.84 +3.4
187,211 + ABZR87_RS00935 0.84 +3.4
187,212 - ABZR87_RS00935 0.84 +0.9
187,468 + +0.4
188,142 + ABZR87_RS00945 0.22 -0.9
188,142 + ABZR87_RS00945 0.22 -0.7
188,143 - ABZR87_RS00945 0.22 +1.1
188,143 - ABZR87_RS00945 0.22 -3.0
188,160 + ABZR87_RS00945 0.25 -0.5
188,322 + ABZR87_RS00945 0.50 +0.0
188,322 + ABZR87_RS00945 0.50 +0.7
188,322 + ABZR87_RS00945 0.50 -0.7
188,322 + ABZR87_RS00945 0.50 -0.0
188,322 + ABZR87_RS00945 0.50 +0.1
188,323 - ABZR87_RS00945 0.50 -0.9
188,323 - ABZR87_RS00945 0.50 -0.6
188,436 + ABZR87_RS00945 0.68 +0.1
188,436 + ABZR87_RS00945 0.68 -0.4
188,436 + ABZR87_RS00945 0.68 -1.1

Or see this region's nucleotide sequence