Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00895

Experiment: Ra1_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00885 and ABZR87_RS00890 are separated by 10 nucleotidesABZR87_RS00890 and ABZR87_RS00895 are separated by 15 nucleotidesABZR87_RS00895 and ABZR87_RS00900 are separated by 113 nucleotides ABZR87_RS00885: ABZR87_RS00885 - 2OG-Fe(II) oxygenase, at 177,995 to 178,735 _RS00885 ABZR87_RS00890: ABZR87_RS00890 - DNA oxidative demethylase AlkB, at 178,746 to 179,402 _RS00890 ABZR87_RS00895: ABZR87_RS00895 - DNA-3-methyladenine glycosylase, at 179,418 to 180,068 _RS00895 ABZR87_RS00900: ABZR87_RS00900 - bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada, at 180,182 to 181,267 _RS00900 Position (kb) 179 180 181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.430 kb on + strand, within ABZR87_RS00885at 178.430 kb on + strand, within ABZR87_RS00885at 178.430 kb on + strand, within ABZR87_RS00885at 178.431 kb on - strand, within ABZR87_RS00885at 178.455 kb on - strand, within ABZR87_RS00885at 178.455 kb on - strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.649 kb on + strand, within ABZR87_RS00885at 178.650 kb on - strand, within ABZR87_RS00885at 178.650 kb on - strand, within ABZR87_RS00885at 178.702 kb on + strandat 178.702 kb on + strandat 178.702 kb on + strandat 178.702 kb on + strandat 178.703 kb on - strandat 178.703 kb on - strandat 178.733 kb on + strandat 178.733 kb on + strandat 178.733 kb on + strandat 178.992 kb on + strand, within ABZR87_RS00890at 178.993 kb on - strand, within ABZR87_RS00890at 178.993 kb on - strand, within ABZR87_RS00890at 179.124 kb on + strand, within ABZR87_RS00890at 179.125 kb on - strand, within ABZR87_RS00890at 179.125 kb on - strand, within ABZR87_RS00890at 179.125 kb on - strand, within ABZR87_RS00890at 179.125 kb on - strand, within ABZR87_RS00890at 179.175 kb on + strand, within ABZR87_RS00890at 179.176 kb on - strand, within ABZR87_RS00890at 179.556 kb on + strand, within ABZR87_RS00895at 179.557 kb on - strand, within ABZR87_RS00895at 179.557 kb on - strand, within ABZR87_RS00895at 179.557 kb on - strand, within ABZR87_RS00895at 179.640 kb on + strand, within ABZR87_RS00895at 179.878 kb on - strand, within ABZR87_RS00895at 179.924 kb on - strand, within ABZR87_RS00895at 180.030 kb on + strandat 180.030 kb on + strandat 180.030 kb on + strandat 180.030 kb on + strandat 180.031 kb on - strandat 180.034 kb on + strandat 180.034 kb on + strandat 180.035 kb on - strandat 180.035 kb on - strandat 180.035 kb on - strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.147 kb on + strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.148 kb on - strandat 180.152 kb on + strandat 180.152 kb on + strandat 180.153 kb on - strandat 180.153 kb on - strandat 180.153 kb on - strandat 180.287 kb on + strandat 180.294 kb on + strand, within ABZR87_RS00900at 180.311 kb on + strand, within ABZR87_RS00900at 180.311 kb on + strand, within ABZR87_RS00900at 180.311 kb on + strand, within ABZR87_RS00900at 180.311 kb on + strand, within ABZR87_RS00900at 180.312 kb on - strand, within ABZR87_RS00900at 180.312 kb on - strand, within ABZR87_RS00900at 180.312 kb on - strand, within ABZR87_RS00900at 180.312 kb on - strand, within ABZR87_RS00900at 180.545 kb on + strand, within ABZR87_RS00900at 180.545 kb on + strand, within ABZR87_RS00900at 180.596 kb on + strand, within ABZR87_RS00900at 180.596 kb on + strand, within ABZR87_RS00900at 180.668 kb on + strand, within ABZR87_RS00900at 180.668 kb on + strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.669 kb on - strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.701 kb on + strand, within ABZR87_RS00900at 180.702 kb on - strand, within ABZR87_RS00900at 180.702 kb on - strand, within ABZR87_RS00900at 180.895 kb on - strand, within ABZR87_RS00900at 180.990 kb on + strand, within ABZR87_RS00900at 180.990 kb on + strand, within ABZR87_RS00900at 180.991 kb on - strand, within ABZR87_RS00900at 180.991 kb on - strand, within ABZR87_RS00900at 181.060 kb on + strand, within ABZR87_RS00900

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra1_0.1
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178,430 + ABZR87_RS00885 0.59 -0.4
178,430 + ABZR87_RS00885 0.59 +0.3
178,430 + ABZR87_RS00885 0.59 -1.0
178,431 - ABZR87_RS00885 0.59 -1.2
178,455 - ABZR87_RS00885 0.62 -0.9
178,455 - ABZR87_RS00885 0.62 -0.7
178,649 + ABZR87_RS00885 0.88 -0.7
178,649 + ABZR87_RS00885 0.88 -2.0
178,649 + ABZR87_RS00885 0.88 +0.2
178,649 + ABZR87_RS00885 0.88 +0.5
178,650 - ABZR87_RS00885 0.88 -0.6
178,650 - ABZR87_RS00885 0.88 -1.4
178,702 + +1.2
178,702 + +0.1
178,702 + +1.7
178,702 + -0.0
178,703 - -0.6
178,703 - -1.3
178,733 + +0.2
178,733 + -0.2
178,733 + -0.2
178,992 + ABZR87_RS00890 0.37 +2.7
178,993 - ABZR87_RS00890 0.38 +0.9
178,993 - ABZR87_RS00890 0.38 +0.0
179,124 + ABZR87_RS00890 0.58 -0.6
179,125 - ABZR87_RS00890 0.58 -1.1
179,125 - ABZR87_RS00890 0.58 +0.3
179,125 - ABZR87_RS00890 0.58 +1.2
179,125 - ABZR87_RS00890 0.58 +0.5
179,175 + ABZR87_RS00890 0.65 -1.8
179,176 - ABZR87_RS00890 0.65 +0.4
179,556 + ABZR87_RS00895 0.21 -0.5
179,557 - ABZR87_RS00895 0.21 -0.6
179,557 - ABZR87_RS00895 0.21 -1.0
179,557 - ABZR87_RS00895 0.21 -0.0
179,640 + ABZR87_RS00895 0.34 -0.2
179,878 - ABZR87_RS00895 0.71 -0.8
179,924 - ABZR87_RS00895 0.78 -0.5
180,030 + -0.5
180,030 + +0.9
180,030 + -0.0
180,030 + -0.2
180,031 - +1.9
180,034 + +0.9
180,034 + +0.3
180,035 - -0.7
180,035 - -1.4
180,035 - +0.2
180,147 + -0.5
180,147 + +1.9
180,147 + -0.6
180,147 + +0.4
180,147 + -0.3
180,147 + -0.2
180,147 + -0.2
180,148 - -0.1
180,148 - -1.7
180,148 - +0.2
180,148 - -0.6
180,148 - -0.8
180,148 - -0.6
180,148 - +0.1
180,148 - +0.4
180,148 - +0.6
180,148 - -0.5
180,152 + +0.2
180,152 + -0.5
180,153 - -0.9
180,153 - -0.2
180,153 - -0.3
180,287 + +0.4
180,294 + ABZR87_RS00900 0.10 -2.5
180,311 + ABZR87_RS00900 0.12 +0.4
180,311 + ABZR87_RS00900 0.12 +0.7
180,311 + ABZR87_RS00900 0.12 -1.2
180,311 + ABZR87_RS00900 0.12 -0.4
180,312 - ABZR87_RS00900 0.12 -0.5
180,312 - ABZR87_RS00900 0.12 -0.4
180,312 - ABZR87_RS00900 0.12 -3.0
180,312 - ABZR87_RS00900 0.12 -0.2
180,545 + ABZR87_RS00900 0.33 -0.2
180,545 + ABZR87_RS00900 0.33 -2.3
180,596 + ABZR87_RS00900 0.38 +0.4
180,596 + ABZR87_RS00900 0.38 +0.1
180,668 + ABZR87_RS00900 0.45 -0.7
180,668 + ABZR87_RS00900 0.45 -0.4
180,669 - ABZR87_RS00900 0.45 +0.3
180,669 - ABZR87_RS00900 0.45 -0.7
180,669 - ABZR87_RS00900 0.45 +1.1
180,669 - ABZR87_RS00900 0.45 +1.3
180,701 + ABZR87_RS00900 0.48 +0.6
180,701 + ABZR87_RS00900 0.48 +0.7
180,701 + ABZR87_RS00900 0.48 +0.7
180,701 + ABZR87_RS00900 0.48 +0.3
180,702 - ABZR87_RS00900 0.48 +0.2
180,702 - ABZR87_RS00900 0.48 +0.7
180,895 - ABZR87_RS00900 0.66 -0.8
180,990 + ABZR87_RS00900 0.74 -1.2
180,990 + ABZR87_RS00900 0.74 -1.7
180,991 - ABZR87_RS00900 0.74 +0.6
180,991 - ABZR87_RS00900 0.74 +1.1
181,060 + ABZR87_RS00900 0.81 -0.3

Or see this region's nucleotide sequence