Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00815 and ABZR87_RS00820 are separated by 67 nucleotides ABZR87_RS00820 and ABZR87_RS00825 are separated by 105 nucleotides ABZR87_RS00825 and ABZR87_RS00830 are separated by 148 nucleotides ABZR87_RS00830 and ABZR87_RS00835 are separated by 148 nucleotides
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
ABZR87_RS00820: ABZR87_RS00820 - YajQ family cyclic di-GMP-binding protein, at 165,326 to 165,811
_RS00820
ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945
_RS00825
ABZR87_RS00830: ABZR87_RS00830 - pyrimidine/purine nucleoside phosphorylase, at 167,094 to 167,411
_RS00830
ABZR87_RS00835: ABZR87_RS00835 - argininosuccinate synthase, at 167,560 to 168,897
_RS00835
Position (kb) 165
166
167 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 165.043 kb on + strand at 165.043 kb on + strand at 165.044 kb on - strand at 165.044 kb on - strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.059 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.256 kb on + strand at 165.256 kb on + strand at 165.576 kb on + strand, within ABZR87_RS00820 at 165.576 kb on + strand, within ABZR87_RS00820 at 165.577 kb on - strand, within ABZR87_RS00820 at 165.791 kb on + strand at 165.791 kb on + strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.886 kb on + strand at 165.886 kb on + strand at 165.886 kb on + strand at 166.943 kb on + strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 166.944 kb on - strand at 167.023 kb on + strand at 167.024 kb on - strand at 167.046 kb on + strand at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.145 kb on + strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.146 kb on - strand, within ABZR87_RS00830 at 167.177 kb on + strand, within ABZR87_RS00830 at 167.178 kb on - strand, within ABZR87_RS00830 at 167.286 kb on + strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.287 kb on - strand, within ABZR87_RS00830 at 167.386 kb on - strand at 167.386 kb on - strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.391 kb on + strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.392 kb on - strand at 167.404 kb on - strand at 167.427 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.473 kb on + strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.474 kb on - strand at 167.674 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.680 kb on + strand at 167.681 kb on - strand at 167.681 kb on - strand at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.716 kb on + strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.717 kb on - strand, within ABZR87_RS00835 at 167.747 kb on - strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.850 kb on + strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.851 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835 at 167.855 kb on - strand, within ABZR87_RS00835
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 164,983 + ABZR87_RS00815 0.88 +1.0 164,983 + ABZR87_RS00815 0.88 +0.5 164,984 - ABZR87_RS00815 0.88 +1.3 164,984 - ABZR87_RS00815 0.88 -0.4 165,043 + -0.6 165,043 + -0.8 165,044 - -2.2 165,044 - -0.4 165,058 + +0.7 165,058 + +0.2 165,058 + +0.1 165,058 + -1.2 165,058 + +1.0 165,058 + +0.1 165,058 + +1.0 165,058 + -1.5 165,059 - +0.1 165,073 - +1.1 165,073 - -1.0 165,073 - +0.6 165,073 - -1.7 165,116 - -0.3 165,116 - +0.9 165,116 - +0.2 165,116 - -0.6 165,256 + -0.1 165,256 + -0.4 165,576 + ABZR87_RS00820 0.51 -0.1 165,576 + ABZR87_RS00820 0.51 +0.7 165,577 - ABZR87_RS00820 0.52 +1.3 165,791 + +0.4 165,791 + -0.5 165,792 - +0.2 165,792 - +0.1 165,792 - -0.6 165,884 + -0.3 165,884 + +0.9 165,884 + +1.1 165,884 + +0.9 165,884 + -0.6 165,884 + -0.2 165,885 - +0.1 165,885 - +0.4 165,885 - -0.2 165,885 - -0.7 165,886 + +0.6 165,886 + +1.0 165,886 + +1.1 166,943 + +0.2 166,944 - -0.5 166,944 - +1.1 166,944 - -1.8 166,944 - -0.5 166,944 - -0.7 167,023 + +0.1 167,024 - +0.3 167,046 + +0.1 167,145 + ABZR87_RS00830 0.16 -0.1 167,145 + ABZR87_RS00830 0.16 +1.1 167,145 + ABZR87_RS00830 0.16 -0.8 167,145 + ABZR87_RS00830 0.16 -0.2 167,145 + ABZR87_RS00830 0.16 -0.7 167,146 - ABZR87_RS00830 0.16 +0.1 167,146 - ABZR87_RS00830 0.16 -0.7 167,177 + ABZR87_RS00830 0.26 -1.2 167,178 - ABZR87_RS00830 0.26 -0.5 167,286 + ABZR87_RS00830 0.60 +0.9 167,287 - ABZR87_RS00830 0.61 +0.4 167,287 - ABZR87_RS00830 0.61 -0.5 167,287 - ABZR87_RS00830 0.61 +0.4 167,386 - -0.9 167,386 - +0.8 167,391 + -0.1 167,391 + -0.6 167,391 + -0.2 167,391 + +1.3 167,391 + +0.1 167,391 + +0.2 167,391 + +1.8 167,391 + -0.3 167,391 + +0.4 167,391 + +0.5 167,392 - +0.1 167,392 - +0.1 167,392 - +0.6 167,392 - +0.3 167,392 - -0.3 167,404 - +0.5 167,427 + -0.9 167,473 + -0.7 167,473 + -1.2 167,473 + +1.1 167,473 + -0.4 167,473 + -0.9 167,474 - +1.0 167,474 - +0.1 167,474 - -0.7 167,674 + +1.1 167,680 + -0.3 167,680 + +0.1 167,680 + -0.3 167,681 - +1.1 167,681 - +0.4 167,716 + ABZR87_RS00835 0.12 +0.1 167,716 + ABZR87_RS00835 0.12 +1.7 167,716 + ABZR87_RS00835 0.12 -1.3 167,716 + ABZR87_RS00835 0.12 -0.3 167,716 + ABZR87_RS00835 0.12 -1.1 167,717 - ABZR87_RS00835 0.12 -1.3 167,717 - ABZR87_RS00835 0.12 +0.7 167,747 - ABZR87_RS00835 0.14 +1.7 167,850 + ABZR87_RS00835 0.22 -1.4 167,850 + ABZR87_RS00835 0.22 -2.0 167,850 + ABZR87_RS00835 0.22 -0.8 167,850 + ABZR87_RS00835 0.22 +0.1 167,850 + ABZR87_RS00835 0.22 -1.1 167,851 - ABZR87_RS00835 0.22 -1.3 167,851 - ABZR87_RS00835 0.22 +1.1 167,851 - ABZR87_RS00835 0.22 -0.1 167,851 - ABZR87_RS00835 0.22 -0.3 167,851 - ABZR87_RS00835 0.22 -0.3 167,855 - ABZR87_RS00835 0.22 -2.0 167,855 - ABZR87_RS00835 0.22 +0.4
Or see this region's nucleotide sequence