Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00765 and ABZR87_RS00770 overlap by 7 nucleotides ABZR87_RS00770 and ABZR87_RS00775 are separated by 16 nucleotides ABZR87_RS00775 and ABZR87_RS00780 are separated by 261 nucleotides
ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271
_RS00765
ABZR87_RS00770: ABZR87_RS00770 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 155,265 to 155,843
_RS00770
ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011
_RS00775
ABZR87_RS00780: ABZR87_RS00780 - chalcone isomerase family protein, at 157,273 to 157,923
_RS00780
Position (kb) 155
156
157
158 Strain fitness (log2 ratio) -2
-1
0
1
2 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 155.087 kb on + strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.295 kb on + strand at 155.295 kb on + strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.848 kb on + strand at 155.848 kb on + strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.155 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.271 kb on + strand, within ABZR87_RS00775 at 156.272 kb on - strand, within ABZR87_RS00775 at 156.281 kb on + strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.282 kb on - strand, within ABZR87_RS00775 at 156.337 kb on + strand, within ABZR87_RS00775 at 156.350 kb on + strand, within ABZR87_RS00775 at 156.351 kb on - strand, within ABZR87_RS00775 at 156.390 kb on + strand, within ABZR87_RS00775 at 156.577 kb on + strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.578 kb on - strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.607 kb on + strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.608 kb on - strand, within ABZR87_RS00775 at 156.673 kb on + strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 156.674 kb on - strand, within ABZR87_RS00775 at 157.067 kb on + strand at 157.067 kb on + strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.068 kb on - strand at 157.101 kb on + strand at 157.123 kb on + strand at 157.147 kb on + strand at 157.147 kb on + strand at 157.148 kb on - strand at 157.170 kb on + strand at 157.171 kb on - strand at 157.171 kb on - strand at 157.172 kb on + strand at 157.172 kb on + strand at 157.173 kb on - strand at 157.180 kb on - strand at 157.182 kb on + strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.214 kb on - strand at 157.251 kb on + strand at 157.251 kb on + strand at 157.257 kb on + strand at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.516 kb on + strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.517 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.532 kb on - strand, within ABZR87_RS00780 at 157.771 kb on + strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.847 kb on - strand, within ABZR87_RS00780 at 157.988 kb on + strand at 157.988 kb on + strand at 157.988 kb on + strand at 157.989 kb on - strand at 157.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 154,937 + ABZR87_RS00765 0.78 -1.1 154,937 + ABZR87_RS00765 0.78 -0.0 154,937 + ABZR87_RS00765 0.78 -0.7 154,937 + ABZR87_RS00765 0.78 -0.6 154,937 + ABZR87_RS00765 0.78 -1.1 154,937 + ABZR87_RS00765 0.78 -1.2 154,937 + ABZR87_RS00765 0.78 -0.6 154,937 + ABZR87_RS00765 0.78 -0.7 154,938 - ABZR87_RS00765 0.78 +1.1 154,938 - ABZR87_RS00765 0.78 +0.1 155,087 + ABZR87_RS00765 0.88 +0.2 155,088 - ABZR87_RS00765 0.88 -0.3 155,088 - ABZR87_RS00765 0.88 -0.7 155,088 - ABZR87_RS00765 0.88 +1.7 155,088 - ABZR87_RS00765 0.88 -1.1 155,088 - ABZR87_RS00765 0.88 -0.6 155,088 - ABZR87_RS00765 0.88 -1.3 155,295 + -0.7 155,295 + +1.3 155,296 - +0.6 155,296 - +0.4 155,296 - +0.1 155,296 - -1.1 155,848 + +0.4 155,848 + -1.5 155,849 - -0.7 155,849 - +0.3 155,849 - +0.4 155,849 - +0.6 156,071 - ABZR87_RS00775 0.18 -0.3 156,071 - ABZR87_RS00775 0.18 +0.9 156,071 - ABZR87_RS00775 0.18 +0.0 156,071 - ABZR87_RS00775 0.18 -0.0 156,071 - ABZR87_RS00775 0.18 -0.8 156,071 - ABZR87_RS00775 0.18 +0.6 156,072 + ABZR87_RS00775 0.18 -1.3 156,072 + ABZR87_RS00775 0.18 -1.1 156,072 + ABZR87_RS00775 0.18 -0.1 156,072 + ABZR87_RS00775 0.18 +0.6 156,073 - ABZR87_RS00775 0.18 -1.4 156,073 - ABZR87_RS00775 0.18 -0.0 156,155 - ABZR87_RS00775 0.26 -0.1 156,254 - ABZR87_RS00775 0.34 +0.5 156,254 - ABZR87_RS00775 0.34 -1.1 156,271 + ABZR87_RS00775 0.36 +1.0 156,272 - ABZR87_RS00775 0.36 +0.5 156,281 + ABZR87_RS00775 0.37 -2.5 156,282 - ABZR87_RS00775 0.37 +0.7 156,282 - ABZR87_RS00775 0.37 -0.4 156,337 + ABZR87_RS00775 0.41 -0.1 156,350 + ABZR87_RS00775 0.43 +0.7 156,351 - ABZR87_RS00775 0.43 +0.5 156,390 + ABZR87_RS00775 0.46 -0.3 156,577 + ABZR87_RS00775 0.62 -0.3 156,578 - ABZR87_RS00775 0.62 +0.3 156,578 - ABZR87_RS00775 0.62 -0.6 156,607 + ABZR87_RS00775 0.65 +0.3 156,607 + ABZR87_RS00775 0.65 -0.9 156,608 - ABZR87_RS00775 0.65 +1.4 156,608 - ABZR87_RS00775 0.65 +0.0 156,608 - ABZR87_RS00775 0.65 +0.6 156,608 - ABZR87_RS00775 0.65 -0.5 156,673 + ABZR87_RS00775 0.71 +0.3 156,674 - ABZR87_RS00775 0.71 +0.3 156,674 - ABZR87_RS00775 0.71 +0.1 157,067 + -0.7 157,067 + -1.6 157,068 - +0.3 157,068 - -0.9 157,068 - +0.5 157,101 + -1.1 157,123 + -0.9 157,147 + -0.9 157,147 + -1.7 157,148 - +1.5 157,170 + -0.3 157,171 - +0.0 157,171 - +0.4 157,172 + +0.2 157,172 + +0.9 157,173 - +0.4 157,180 - +2.1 157,182 + +0.8 157,214 - +0.5 157,214 - +2.5 157,214 - -2.4 157,214 - +0.4 157,214 - -0.8 157,251 + +0.1 157,251 + +0.4 157,257 + -0.2 157,516 + ABZR87_RS00780 0.37 +0.2 157,516 + ABZR87_RS00780 0.37 +1.4 157,516 + ABZR87_RS00780 0.37 -2.6 157,516 + ABZR87_RS00780 0.37 -0.5 157,516 + ABZR87_RS00780 0.37 +0.4 157,517 - ABZR87_RS00780 0.37 -1.0 157,517 - ABZR87_RS00780 0.37 -1.1 157,517 - ABZR87_RS00780 0.37 -1.9 157,517 - ABZR87_RS00780 0.37 +0.4 157,517 - ABZR87_RS00780 0.37 -0.0 157,532 - ABZR87_RS00780 0.40 +0.2 157,532 - ABZR87_RS00780 0.40 +0.5 157,532 - ABZR87_RS00780 0.40 -0.7 157,771 + ABZR87_RS00780 0.76 +0.2 157,847 - ABZR87_RS00780 0.88 +1.7 157,847 - ABZR87_RS00780 0.88 +1.1 157,988 + -0.8 157,988 + +1.3 157,988 + -0.0 157,989 - -0.4 157,989 - +1.2
Or see this region's nucleotide sequence