Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00755 and ABZR87_RS00760 are separated by 0 nucleotides ABZR87_RS00760 and ABZR87_RS00765 are separated by 3 nucleotides ABZR87_RS00765 and ABZR87_RS00770 overlap by 7 nucleotides ABZR87_RS00770 and ABZR87_RS00775 are separated by 16 nucleotides
ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198
_RS00755
ABZR87_RS00760: ABZR87_RS00760 - GNAT family N-acetyltransferase, at 153,199 to 153,744
_RS00760
ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271
_RS00765
ABZR87_RS00770: ABZR87_RS00770 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 155,265 to 155,843
_RS00770
ABZR87_RS00775: ABZR87_RS00775 - tRNA epoxyqueuosine(34) reductase QueG, at 155,860 to 157,011
_RS00775
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -2
-1
0
1
2 at 152.863 kb on + strand, within ABZR87_RS00755 at 152.864 kb on - strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.091 kb on + strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.092 kb on - strand, within ABZR87_RS00755 at 153.137 kb on - strand at 153.137 kb on - strand at 153.137 kb on - strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.245 kb on + strand at 153.246 kb on - strand at 153.246 kb on - strand at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.323 kb on + strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.324 kb on - strand, within ABZR87_RS00760 at 153.353 kb on + strand, within ABZR87_RS00760 at 153.681 kb on + strand, within ABZR87_RS00760 at 154.116 kb on - strand, within ABZR87_RS00765 at 154.286 kb on + strand, within ABZR87_RS00765 at 154.287 kb on - strand, within ABZR87_RS00765 at 154.287 kb on - strand, within ABZR87_RS00765 at 154.287 kb on - strand, within ABZR87_RS00765 at 154.364 kb on - strand, within ABZR87_RS00765 at 154.446 kb on + strand, within ABZR87_RS00765 at 154.446 kb on + strand, within ABZR87_RS00765 at 154.446 kb on + strand, within ABZR87_RS00765 at 154.447 kb on - strand, within ABZR87_RS00765 at 154.447 kb on - strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.937 kb on + strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 154.938 kb on - strand, within ABZR87_RS00765 at 155.087 kb on + strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.088 kb on - strand, within ABZR87_RS00765 at 155.295 kb on + strand at 155.295 kb on + strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.296 kb on - strand at 155.848 kb on + strand at 155.848 kb on + strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 155.849 kb on - strand at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.071 kb on - strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.072 kb on + strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.073 kb on - strand, within ABZR87_RS00775 at 156.155 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.254 kb on - strand, within ABZR87_RS00775 at 156.271 kb on + strand, within ABZR87_RS00775
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 152,863 + ABZR87_RS00755 0.67 +0.4 152,864 - ABZR87_RS00755 0.68 +1.4 153,091 + ABZR87_RS00755 0.90 +0.4 153,091 + ABZR87_RS00755 0.90 -1.0 153,091 + ABZR87_RS00755 0.90 -1.8 153,092 - ABZR87_RS00755 0.90 -0.8 153,092 - ABZR87_RS00755 0.90 -0.6 153,092 - ABZR87_RS00755 0.90 +0.9 153,092 - ABZR87_RS00755 0.90 -0.1 153,137 - -0.6 153,137 - +0.5 153,137 - +0.6 153,245 + +0.5 153,245 + -0.2 153,245 + +0.6 153,245 + -0.5 153,245 + +0.3 153,246 - +1.8 153,246 - -0.3 153,323 + ABZR87_RS00760 0.23 +0.7 153,323 + ABZR87_RS00760 0.23 -1.2 153,323 + ABZR87_RS00760 0.23 +0.1 153,323 + ABZR87_RS00760 0.23 -0.8 153,323 + ABZR87_RS00760 0.23 -0.7 153,323 + ABZR87_RS00760 0.23 -0.6 153,324 - ABZR87_RS00760 0.23 -1.9 153,324 - ABZR87_RS00760 0.23 +0.1 153,324 - ABZR87_RS00760 0.23 -1.7 153,353 + ABZR87_RS00760 0.28 -0.1 153,681 + ABZR87_RS00760 0.88 +1.2 154,116 - ABZR87_RS00765 0.24 -0.1 154,286 + ABZR87_RS00765 0.35 -1.8 154,287 - ABZR87_RS00765 0.35 +0.2 154,287 - ABZR87_RS00765 0.35 -0.1 154,287 - ABZR87_RS00765 0.35 -0.3 154,364 - ABZR87_RS00765 0.40 -2.7 154,446 + ABZR87_RS00765 0.46 +0.3 154,446 + ABZR87_RS00765 0.46 -0.4 154,446 + ABZR87_RS00765 0.46 -0.1 154,447 - ABZR87_RS00765 0.46 +0.7 154,447 - ABZR87_RS00765 0.46 -0.5 154,937 + ABZR87_RS00765 0.78 -1.1 154,937 + ABZR87_RS00765 0.78 -0.0 154,937 + ABZR87_RS00765 0.78 -0.7 154,937 + ABZR87_RS00765 0.78 -0.6 154,937 + ABZR87_RS00765 0.78 -1.1 154,937 + ABZR87_RS00765 0.78 -1.2 154,937 + ABZR87_RS00765 0.78 -0.6 154,937 + ABZR87_RS00765 0.78 -0.7 154,938 - ABZR87_RS00765 0.78 +1.1 154,938 - ABZR87_RS00765 0.78 +0.1 155,087 + ABZR87_RS00765 0.88 +0.2 155,088 - ABZR87_RS00765 0.88 -0.3 155,088 - ABZR87_RS00765 0.88 -0.7 155,088 - ABZR87_RS00765 0.88 +1.7 155,088 - ABZR87_RS00765 0.88 -1.1 155,088 - ABZR87_RS00765 0.88 -0.6 155,088 - ABZR87_RS00765 0.88 -1.3 155,295 + -0.7 155,295 + +1.3 155,296 - +0.6 155,296 - +0.4 155,296 - +0.1 155,296 - -1.1 155,848 + +0.4 155,848 + -1.5 155,849 - -0.7 155,849 - +0.3 155,849 - +0.4 155,849 - +0.6 156,071 - ABZR87_RS00775 0.18 -0.3 156,071 - ABZR87_RS00775 0.18 +0.9 156,071 - ABZR87_RS00775 0.18 +0.0 156,071 - ABZR87_RS00775 0.18 -0.0 156,071 - ABZR87_RS00775 0.18 -0.8 156,071 - ABZR87_RS00775 0.18 +0.6 156,072 + ABZR87_RS00775 0.18 -1.3 156,072 + ABZR87_RS00775 0.18 -1.1 156,072 + ABZR87_RS00775 0.18 -0.1 156,072 + ABZR87_RS00775 0.18 +0.6 156,073 - ABZR87_RS00775 0.18 -1.4 156,073 - ABZR87_RS00775 0.18 -0.0 156,155 - ABZR87_RS00775 0.26 -0.1 156,254 - ABZR87_RS00775 0.34 +0.5 156,254 - ABZR87_RS00775 0.34 -1.1 156,271 + ABZR87_RS00775 0.36 +1.0
Or see this region's nucleotide sequence