Experiment: Ra1_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00365 and ABZR87_RS00370 are separated by 25 nucleotides ABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotides ABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotides
ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501
_RS00365
ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096
_RS00370
ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487
_RS00375
ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134
_RS00380
Position (kb) 76
77
78 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 75.146 kb on + strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.501 kb on + strand at 75.501 kb on + strand at 75.502 kb on - strand at 75.502 kb on - strand at 75.529 kb on - strand at 75.582 kb on + strand at 75.583 kb on - strand at 75.583 kb on - strand at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.735 kb on + strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.874 kb on + strand, within ABZR87_RS00370 at 75.875 kb on - strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 76.151 kb on + strand at 76.151 kb on + strand at 76.163 kb on + strand at 76.164 kb on - strand at 76.298 kb on + strand, within ABZR87_RS00375 at 76.299 kb on - strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.603 kb on - strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.619 kb on + strand, within ABZR87_RS00380 at 78.145 kb on + strand at 78.146 kb on - strand at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra1_0.1 remove 75,146 + ABZR87_RS00365 0.74 -1.3 75,147 - ABZR87_RS00365 0.74 -1.5 75,147 - ABZR87_RS00365 0.74 -0.5 75,147 - ABZR87_RS00365 0.74 -1.1 75,158 + ABZR87_RS00365 0.75 -0.5 75,158 + ABZR87_RS00365 0.75 +0.5 75,158 + ABZR87_RS00365 0.75 +0.5 75,158 + ABZR87_RS00365 0.75 +2.1 75,159 - ABZR87_RS00365 0.75 -0.0 75,159 - ABZR87_RS00365 0.75 +2.7 75,233 + ABZR87_RS00365 0.80 +1.4 75,233 + ABZR87_RS00365 0.80 +0.3 75,234 - ABZR87_RS00365 0.81 -0.1 75,234 - ABZR87_RS00365 0.81 -1.6 75,501 + +0.9 75,501 + -1.2 75,502 - -0.3 75,502 - -0.9 75,529 - +0.6 75,582 + -1.4 75,583 - +0.1 75,583 - -0.8 75,620 + ABZR87_RS00370 0.16 -0.4 75,620 + ABZR87_RS00370 0.16 +0.1 75,620 + ABZR87_RS00370 0.16 -0.6 75,621 - ABZR87_RS00370 0.16 -0.2 75,621 - ABZR87_RS00370 0.16 +0.0 75,621 - ABZR87_RS00370 0.16 -0.7 75,735 + ABZR87_RS00370 0.36 -0.2 75,736 - ABZR87_RS00370 0.37 -1.0 75,736 - ABZR87_RS00370 0.37 +0.7 75,736 - ABZR87_RS00370 0.37 +1.7 75,874 + ABZR87_RS00370 0.61 -1.2 75,875 - ABZR87_RS00370 0.61 -0.4 75,897 + ABZR87_RS00370 0.65 +0.1 75,897 + ABZR87_RS00370 0.65 -0.6 75,898 - ABZR87_RS00370 0.65 -0.0 75,898 - ABZR87_RS00370 0.65 +0.1 76,151 + -0.2 76,151 + +0.8 76,163 + +0.7 76,164 - -0.2 76,298 + ABZR87_RS00375 0.15 +0.7 76,299 - ABZR87_RS00375 0.15 -0.6 76,598 + ABZR87_RS00375 0.36 +1.2 76,598 + ABZR87_RS00375 0.36 -0.4 76,598 + ABZR87_RS00375 0.36 +0.1 76,599 - ABZR87_RS00375 0.36 -0.8 76,599 - ABZR87_RS00375 0.36 -0.6 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 +0.3 76,599 - ABZR87_RS00375 0.36 -0.9 76,599 - ABZR87_RS00375 0.36 -2.7 76,603 - ABZR87_RS00375 0.37 -0.0 77,258 + ABZR87_RS00375 0.84 -0.9 77,258 + ABZR87_RS00375 0.84 +1.5 77,259 - ABZR87_RS00375 0.84 -0.9 77,259 - ABZR87_RS00375 0.84 -2.1 77,259 - ABZR87_RS00375 0.84 +0.1 77,259 - ABZR87_RS00375 0.84 -0.1 77,619 + ABZR87_RS00380 0.21 +1.7 78,145 + +2.1 78,146 - -3.0 78,325 + +1.8 78,326 + +3.0 78,326 + +1.7 78,326 + +2.3 78,326 + +2.6 78,326 + +2.5 78,326 + +0.4 78,326 + +2.3 78,326 + +2.0 78,326 + +2.7 78,326 + +1.7 78,326 + +2.8 78,326 + +2.7 78,326 + +3.1 78,327 - -2.0 78,327 - +0.7 78,327 - -2.5 78,327 - -3.0 78,327 - -5.1 78,327 - -1.5 78,327 - -3.7 78,425 - -2.3 78,453 + +5.3 78,454 - -2.9 78,454 - -3.5 78,454 - -3.6
Or see this region's nucleotide sequence