Experiment: RCH2_defined_glucose_5mM with L-Proline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000455 and ABIE53_000456 are separated by 155 nucleotides ABIE53_000456 and ABIE53_000457 are separated by 332 nucleotides
ABIE53_000455: ABIE53_000455 - L-2-hydroxyglutarate oxidase LhgO, at 491,043 to 492,149
_000455
ABIE53_000456: ABIE53_000456 - hypothetical protein, at 492,305 to 492,616
_000456
ABIE53_000457: ABIE53_000457 - amidase, at 492,949 to 494,487
_000457
Position (kb) 492
493 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 491.402 kb on + strand, within ABIE53_000455 at 491.718 kb on + strand, within ABIE53_000455 at 491.718 kb on + strand, within ABIE53_000455 at 491.718 kb on + strand, within ABIE53_000455 at 491.719 kb on - strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.736 kb on + strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.737 kb on - strand, within ABIE53_000455 at 491.778 kb on + strand, within ABIE53_000455 at 491.779 kb on - strand, within ABIE53_000455 at 491.779 kb on - strand, within ABIE53_000455 at 491.779 kb on - strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.880 kb on + strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.881 kb on - strand, within ABIE53_000455 at 491.913 kb on + strand, within ABIE53_000455 at 491.913 kb on + strand, within ABIE53_000455 at 491.913 kb on + strand, within ABIE53_000455 at 491.914 kb on - strand, within ABIE53_000455 at 491.931 kb on + strand, within ABIE53_000455 at 491.932 kb on - strand, within ABIE53_000455 at 491.932 kb on - strand, within ABIE53_000455 at 491.970 kb on + strand, within ABIE53_000455 at 491.970 kb on + strand, within ABIE53_000455 at 492.201 kb on + strand at 492.201 kb on + strand at 492.201 kb on + strand at 492.201 kb on + strand at 492.201 kb on + strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.202 kb on - strand at 492.207 kb on + strand at 492.207 kb on + strand at 492.208 kb on - strand at 492.208 kb on - strand at 492.243 kb on + strand at 492.243 kb on + strand at 492.243 kb on + strand at 492.244 kb on - strand at 492.244 kb on - strand at 492.285 kb on + strand at 492.285 kb on + strand at 492.285 kb on + strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.286 kb on - strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.287 kb on + strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.288 kb on - strand at 492.340 kb on + strand, within ABIE53_000456 at 492.435 kb on - strand, within ABIE53_000456 at 492.435 kb on - strand, within ABIE53_000456 at 492.435 kb on - strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.479 kb on + strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.480 kb on - strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.515 kb on + strand, within ABIE53_000456 at 492.516 kb on - strand, within ABIE53_000456 at 492.516 kb on - strand, within ABIE53_000456 at 492.516 kb on - strand, within ABIE53_000456 at 492.516 kb on - strand, within ABIE53_000456 at 492.540 kb on - strand, within ABIE53_000456 at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.599 kb on + strand at 492.600 kb on - strand at 492.600 kb on - strand at 492.600 kb on - strand at 492.600 kb on - strand at 492.600 kb on - strand at 492.601 kb on + strand at 492.601 kb on + strand at 492.601 kb on + strand at 492.601 kb on + strand at 492.601 kb on + strand at 492.602 kb on - strand at 492.602 kb on - strand at 492.602 kb on - strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.666 kb on + strand at 492.667 kb on - strand at 492.667 kb on - strand at 492.667 kb on - strand at 492.667 kb on - strand at 492.731 kb on + strand at 492.731 kb on + strand at 492.731 kb on + strand at 492.731 kb on + strand at 492.731 kb on + strand at 492.732 kb on - strand at 492.732 kb on - strand at 492.742 kb on + strand at 492.742 kb on + strand at 492.743 kb on - strand at 492.743 kb on - strand at 492.798 kb on + strand at 492.798 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.832 kb on + strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.833 kb on - strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.835 kb on + strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.836 kb on - strand at 492.950 kb on + strand at 492.950 kb on + strand at 492.951 kb on - strand at 493.316 kb on + strand, within ABIE53_000457
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with L-Proline 5 mM remove 491,402 + ABIE53_000455 0.32 +0.4 491,718 + ABIE53_000455 0.61 -2.1 491,718 + ABIE53_000455 0.61 +1.9 491,718 + ABIE53_000455 0.61 -0.4 491,719 - ABIE53_000455 0.61 +0.3 491,736 + ABIE53_000455 0.63 -1.5 491,736 + ABIE53_000455 0.63 -1.7 491,736 + ABIE53_000455 0.63 -0.4 491,736 + ABIE53_000455 0.63 -0.1 491,736 + ABIE53_000455 0.63 -0.4 491,736 + ABIE53_000455 0.63 -0.2 491,737 - ABIE53_000455 0.63 +1.6 491,737 - ABIE53_000455 0.63 +0.4 491,737 - ABIE53_000455 0.63 -0.3 491,737 - ABIE53_000455 0.63 -0.6 491,737 - ABIE53_000455 0.63 +3.1 491,737 - ABIE53_000455 0.63 -0.2 491,737 - ABIE53_000455 0.63 -1.2 491,778 + ABIE53_000455 0.66 -1.4 491,779 - ABIE53_000455 0.66 -0.6 491,779 - ABIE53_000455 0.66 -0.2 491,779 - ABIE53_000455 0.66 -0.0 491,880 + ABIE53_000455 0.76 +0.6 491,880 + ABIE53_000455 0.76 +0.9 491,880 + ABIE53_000455 0.76 -0.7 491,880 + ABIE53_000455 0.76 -0.6 491,880 + ABIE53_000455 0.76 -0.2 491,880 + ABIE53_000455 0.76 -0.1 491,880 + ABIE53_000455 0.76 +0.1 491,880 + ABIE53_000455 0.76 +1.9 491,881 - ABIE53_000455 0.76 +0.9 491,881 - ABIE53_000455 0.76 +1.4 491,881 - ABIE53_000455 0.76 -0.1 491,881 - ABIE53_000455 0.76 -1.2 491,881 - ABIE53_000455 0.76 -0.2 491,881 - ABIE53_000455 0.76 +1.1 491,913 + ABIE53_000455 0.79 +1.5 491,913 + ABIE53_000455 0.79 +0.4 491,913 + ABIE53_000455 0.79 +0.9 491,914 - ABIE53_000455 0.79 -0.4 491,931 + ABIE53_000455 0.80 +0.8 491,932 - ABIE53_000455 0.80 -0.1 491,932 - ABIE53_000455 0.80 -0.2 491,970 + ABIE53_000455 0.84 -0.5 491,970 + ABIE53_000455 0.84 -0.2 492,201 + -1.3 492,201 + +0.8 492,201 + -0.4 492,201 + -0.8 492,201 + -0.4 492,202 - -0.1 492,202 - +1.2 492,202 - -0.4 492,202 - -0.3 492,202 - +1.1 492,202 - +1.2 492,202 - -0.4 492,202 - +0.9 492,202 - +1.9 492,207 + -0.9 492,207 + +0.9 492,208 - +1.9 492,208 - -0.4 492,243 + +0.4 492,243 + +0.9 492,243 + +0.2 492,244 - +0.3 492,244 - -0.2 492,285 + -0.5 492,285 + -0.1 492,285 + -0.4 492,286 - -0.3 492,286 - +0.7 492,286 - +0.9 492,286 - +0.6 492,286 - -0.9 492,287 + -1.6 492,287 + +2.9 492,287 + -0.8 492,287 + -0.6 492,287 + -0.0 492,287 + +0.1 492,287 + -0.4 492,287 + -0.1 492,287 + -0.5 492,288 - -0.1 492,288 - -1.4 492,288 - -0.3 492,288 - -0.2 492,288 - -1.8 492,288 - -0.6 492,288 - -0.2 492,288 - -0.1 492,288 - -0.9 492,340 + ABIE53_000456 0.11 -0.4 492,435 - ABIE53_000456 0.42 -0.2 492,435 - ABIE53_000456 0.42 -0.3 492,435 - ABIE53_000456 0.42 -0.9 492,479 + ABIE53_000456 0.56 -0.6 492,479 + ABIE53_000456 0.56 -0.4 492,479 + ABIE53_000456 0.56 -0.3 492,479 + ABIE53_000456 0.56 +1.2 492,479 + ABIE53_000456 0.56 +0.4 492,479 + ABIE53_000456 0.56 +1.3 492,479 + ABIE53_000456 0.56 +0.2 492,479 + ABIE53_000456 0.56 -0.6 492,479 + ABIE53_000456 0.56 -0.4 492,479 + ABIE53_000456 0.56 -0.9 492,480 - ABIE53_000456 0.56 +0.7 492,480 - ABIE53_000456 0.56 +0.9 492,480 - ABIE53_000456 0.56 -0.3 492,480 - ABIE53_000456 0.56 -0.1 492,480 - ABIE53_000456 0.56 -0.8 492,480 - ABIE53_000456 0.56 -1.8 492,480 - ABIE53_000456 0.56 +0.7 492,480 - ABIE53_000456 0.56 -0.2 492,480 - ABIE53_000456 0.56 +0.4 492,515 + ABIE53_000456 0.67 -0.4 492,515 + ABIE53_000456 0.67 -1.3 492,515 + ABIE53_000456 0.67 -0.6 492,515 + ABIE53_000456 0.67 -0.4 492,515 + ABIE53_000456 0.67 -0.6 492,515 + ABIE53_000456 0.67 -0.1 492,515 + ABIE53_000456 0.67 -0.6 492,515 + ABIE53_000456 0.67 -1.1 492,515 + ABIE53_000456 0.67 +1.9 492,516 - ABIE53_000456 0.68 +0.5 492,516 - ABIE53_000456 0.68 +0.9 492,516 - ABIE53_000456 0.68 +0.9 492,516 - ABIE53_000456 0.68 -0.6 492,540 - ABIE53_000456 0.75 -1.3 492,599 + -1.4 492,599 + -0.9 492,599 + -0.4 492,599 + -0.4 492,599 + +0.0 492,599 + +0.9 492,599 + +0.9 492,599 + +1.9 492,599 + +0.7 492,599 + -0.2 492,599 + -2.2 492,600 - +1.4 492,600 - +1.0 492,600 - +0.4 492,600 - -0.1 492,600 - -0.1 492,601 + -0.5 492,601 + -0.3 492,601 + +0.4 492,601 + -1.2 492,601 + +0.9 492,602 - +0.1 492,602 - +0.5 492,602 - -2.6 492,666 + -0.1 492,666 + -0.4 492,666 + -0.6 492,666 + -0.3 492,666 + -0.7 492,666 + +0.5 492,666 + -0.1 492,666 + +0.5 492,666 + -0.5 492,666 + -0.8 492,667 - -0.6 492,667 - +0.9 492,667 - +0.3 492,667 - +0.6 492,731 + -0.4 492,731 + +0.1 492,731 + -2.2 492,731 + -0.5 492,731 + +0.5 492,732 - -0.9 492,732 - +0.7 492,742 + +0.4 492,742 + -0.6 492,743 - +1.1 492,743 - -0.6 492,798 + +0.4 492,798 + -0.2 492,832 + -1.6 492,832 + +0.1 492,832 + +0.5 492,832 + +0.1 492,832 + +0.1 492,832 + +1.2 492,832 + -2.0 492,832 + +1.9 492,832 + +0.4 492,832 + -0.2 492,833 - +0.4 492,833 - +0.8 492,833 - -0.7 492,833 - -0.5 492,833 - -0.1 492,833 - -0.2 492,833 - -0.5 492,833 - +2.3 492,833 - -1.2 492,833 - +0.4 492,835 + -0.2 492,835 + -0.5 492,835 + -0.6 492,835 + -2.1 492,835 + +0.4 492,835 + +0.9 492,835 + +1.9 492,835 + -0.4 492,836 - +0.5 492,836 - -0.5 492,836 - +0.3 492,836 - +0.5 492,836 - +2.4 492,836 - -1.2 492,836 - +0.2 492,836 - -0.2 492,836 - -0.8 492,836 - +0.9 492,836 - +0.2 492,950 + +0.5 492,950 + -0.2 492,951 - +1.7 493,316 + ABIE53_000457 0.24 -1.6
Or see this region's nucleotide sequence