Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003646

Experiment: RCH2_defined_glucose_5mM with Shikimic Acid 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003645 and ABIE53_003646 are separated by 180 nucleotidesABIE53_003646 and ABIE53_003647 are separated by 153 nucleotides ABIE53_003645: ABIE53_003645 - uracil-DNA glycosylase, at 4,099,385 to 4,100,239 _003645 ABIE53_003646: ABIE53_003646 - FMN-dependent NADH-azoreductase, at 4,100,420 to 4,101,016 _003646 ABIE53_003647: ABIE53_003647 - putative metalloprotease with PDZ domain, at 4,101,170 to 4,102,960 _003647 Position (kb) 4100 4101 4102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4099.432 kb on - strandat 4099.432 kb on - strandat 4100.499 kb on + strand, within ABIE53_003646at 4100.499 kb on + strand, within ABIE53_003646at 4100.550 kb on + strand, within ABIE53_003646at 4100.551 kb on - strand, within ABIE53_003646at 4100.551 kb on - strand, within ABIE53_003646at 4100.551 kb on - strand, within ABIE53_003646at 4100.551 kb on - strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.583 kb on + strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.584 kb on - strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.610 kb on + strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.611 kb on - strand, within ABIE53_003646at 4100.653 kb on + strand, within ABIE53_003646at 4100.654 kb on - strand, within ABIE53_003646at 4100.654 kb on - strand, within ABIE53_003646at 4100.654 kb on - strand, within ABIE53_003646at 4100.655 kb on + strand, within ABIE53_003646at 4100.655 kb on + strand, within ABIE53_003646at 4100.655 kb on + strand, within ABIE53_003646at 4100.655 kb on + strand, within ABIE53_003646at 4100.655 kb on + strand, within ABIE53_003646at 4100.656 kb on - strand, within ABIE53_003646at 4100.656 kb on - strand, within ABIE53_003646at 4100.656 kb on - strand, within ABIE53_003646at 4100.694 kb on + strand, within ABIE53_003646at 4100.694 kb on + strand, within ABIE53_003646at 4100.694 kb on + strand, within ABIE53_003646at 4100.694 kb on + strand, within ABIE53_003646at 4100.694 kb on + strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.695 kb on - strand, within ABIE53_003646at 4100.727 kb on + strand, within ABIE53_003646at 4100.727 kb on + strand, within ABIE53_003646at 4100.727 kb on + strand, within ABIE53_003646at 4100.727 kb on + strand, within ABIE53_003646at 4100.728 kb on - strand, within ABIE53_003646at 4100.728 kb on - strand, within ABIE53_003646at 4100.728 kb on - strand, within ABIE53_003646at 4100.728 kb on - strand, within ABIE53_003646at 4101.028 kb on + strandat 4101.029 kb on - strandat 4101.121 kb on - strandat 4101.149 kb on + strandat 4101.150 kb on - strandat 4101.166 kb on - strandat 4101.166 kb on - strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.237 kb on + strandat 4101.238 kb on - strandat 4101.238 kb on - strandat 4101.238 kb on - strandat 4101.330 kb on + strandat 4101.330 kb on + strandat 4101.675 kb on + strand, within ABIE53_003647at 4101.676 kb on - strand, within ABIE53_003647at 4101.676 kb on - strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.795 kb on + strand, within ABIE53_003647at 4101.796 kb on - strand, within ABIE53_003647at 4101.796 kb on - strand, within ABIE53_003647at 4101.796 kb on - strand, within ABIE53_003647at 4101.796 kb on - strand, within ABIE53_003647at 4101.796 kb on - strand, within ABIE53_003647at 4101.798 kb on + strand, within ABIE53_003647at 4101.798 kb on + strand, within ABIE53_003647at 4101.798 kb on + strand, within ABIE53_003647at 4101.798 kb on + strand, within ABIE53_003647at 4101.798 kb on + strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.799 kb on - strand, within ABIE53_003647at 4101.837 kb on + strand, within ABIE53_003647at 4101.837 kb on + strand, within ABIE53_003647at 4101.838 kb on - strand, within ABIE53_003647at 4101.838 kb on - strand, within ABIE53_003647at 4101.838 kb on - strand, within ABIE53_003647at 4101.838 kb on - strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.840 kb on + strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.841 kb on - strand, within ABIE53_003647at 4101.939 kb on + strand, within ABIE53_003647at 4101.940 kb on - strand, within ABIE53_003647at 4101.940 kb on - strand, within ABIE53_003647at 4101.987 kb on + strand, within ABIE53_003647at 4101.987 kb on + strand, within ABIE53_003647at 4101.987 kb on + strand, within ABIE53_003647at 4101.987 kb on + strand, within ABIE53_003647at 4101.988 kb on - strand, within ABIE53_003647at 4101.988 kb on - strand, within ABIE53_003647at 4101.988 kb on - strand, within ABIE53_003647at 4101.988 kb on - strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.990 kb on + strand, within ABIE53_003647at 4101.991 kb on - strand, within ABIE53_003647at 4101.991 kb on - strand, within ABIE53_003647at 4101.991 kb on - strand, within ABIE53_003647

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Shikimic Acid 5 mM
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4,099,432 - -1.2
4,099,432 - +0.1
4,100,499 + ABIE53_003646 0.13 -0.1
4,100,499 + ABIE53_003646 0.13 -0.9
4,100,550 + ABIE53_003646 0.22 -1.1
4,100,551 - ABIE53_003646 0.22 -0.7
4,100,551 - ABIE53_003646 0.22 -1.3
4,100,551 - ABIE53_003646 0.22 -0.8
4,100,551 - ABIE53_003646 0.22 +0.9
4,100,583 + ABIE53_003646 0.27 -0.2
4,100,583 + ABIE53_003646 0.27 -0.5
4,100,583 + ABIE53_003646 0.27 -2.5
4,100,583 + ABIE53_003646 0.27 +0.1
4,100,583 + ABIE53_003646 0.27 +1.4
4,100,583 + ABIE53_003646 0.27 -2.4
4,100,583 + ABIE53_003646 0.27 +1.5
4,100,583 + ABIE53_003646 0.27 +0.6
4,100,583 + ABIE53_003646 0.27 -0.9
4,100,584 - ABIE53_003646 0.27 -0.8
4,100,584 - ABIE53_003646 0.27 +0.9
4,100,584 - ABIE53_003646 0.27 +0.1
4,100,584 - ABIE53_003646 0.27 +1.1
4,100,584 - ABIE53_003646 0.27 +0.8
4,100,584 - ABIE53_003646 0.27 +0.7
4,100,584 - ABIE53_003646 0.27 -0.2
4,100,584 - ABIE53_003646 0.27 -0.4
4,100,584 - ABIE53_003646 0.27 +0.3
4,100,584 - ABIE53_003646 0.27 -0.6
4,100,584 - ABIE53_003646 0.27 -0.2
4,100,584 - ABIE53_003646 0.27 -0.7
4,100,584 - ABIE53_003646 0.27 +2.1
4,100,584 - ABIE53_003646 0.27 -0.2
4,100,584 - ABIE53_003646 0.27 -0.3
4,100,584 - ABIE53_003646 0.27 -0.3
4,100,610 + ABIE53_003646 0.32 -0.3
4,100,610 + ABIE53_003646 0.32 +0.6
4,100,610 + ABIE53_003646 0.32 -0.2
4,100,610 + ABIE53_003646 0.32 -1.0
4,100,610 + ABIE53_003646 0.32 -0.1
4,100,610 + ABIE53_003646 0.32 +1.1
4,100,610 + ABIE53_003646 0.32 +1.4
4,100,611 - ABIE53_003646 0.32 -2.3
4,100,611 - ABIE53_003646 0.32 +0.5
4,100,611 - ABIE53_003646 0.32 +0.5
4,100,611 - ABIE53_003646 0.32 +0.2
4,100,611 - ABIE53_003646 0.32 -0.3
4,100,611 - ABIE53_003646 0.32 -0.8
4,100,611 - ABIE53_003646 0.32 +1.4
4,100,653 + ABIE53_003646 0.39 -0.2
4,100,654 - ABIE53_003646 0.39 -0.5
4,100,654 - ABIE53_003646 0.39 -2.5
4,100,654 - ABIE53_003646 0.39 -0.3
4,100,655 + ABIE53_003646 0.39 -0.6
4,100,655 + ABIE53_003646 0.39 -0.6
4,100,655 + ABIE53_003646 0.39 +0.0
4,100,655 + ABIE53_003646 0.39 +0.5
4,100,655 + ABIE53_003646 0.39 -1.0
4,100,656 - ABIE53_003646 0.40 -2.3
4,100,656 - ABIE53_003646 0.40 +0.7
4,100,656 - ABIE53_003646 0.40 -2.5
4,100,694 + ABIE53_003646 0.46 -0.2
4,100,694 + ABIE53_003646 0.46 -0.0
4,100,694 + ABIE53_003646 0.46 -0.4
4,100,694 + ABIE53_003646 0.46 -1.0
4,100,694 + ABIE53_003646 0.46 +1.1
4,100,695 - ABIE53_003646 0.46 +0.0
4,100,695 - ABIE53_003646 0.46 -0.6
4,100,695 - ABIE53_003646 0.46 -0.0
4,100,695 - ABIE53_003646 0.46 -1.6
4,100,695 - ABIE53_003646 0.46 +0.7
4,100,695 - ABIE53_003646 0.46 -0.3
4,100,695 - ABIE53_003646 0.46 +0.3
4,100,695 - ABIE53_003646 0.46 +0.9
4,100,727 + ABIE53_003646 0.51 -0.5
4,100,727 + ABIE53_003646 0.51 -1.9
4,100,727 + ABIE53_003646 0.51 +0.0
4,100,727 + ABIE53_003646 0.51 -1.7
4,100,728 - ABIE53_003646 0.52 +1.1
4,100,728 - ABIE53_003646 0.52 -0.9
4,100,728 - ABIE53_003646 0.52 -1.6
4,100,728 - ABIE53_003646 0.52 -1.3
4,101,028 + +0.5
4,101,029 - +0.1
4,101,121 - -1.0
4,101,149 + -1.7
4,101,150 - +1.1
4,101,166 - +0.1
4,101,166 - +0.1
4,101,237 + +1.1
4,101,237 + -0.9
4,101,237 + -1.2
4,101,238 - -0.5
4,101,238 - +0.6
4,101,238 - +1.5
4,101,330 + +0.2
4,101,330 + +1.1
4,101,675 + ABIE53_003647 0.28 -1.2
4,101,676 - ABIE53_003647 0.28 +0.1
4,101,676 - ABIE53_003647 0.28 -2.9
4,101,795 + ABIE53_003647 0.35 -0.2
4,101,795 + ABIE53_003647 0.35 -0.8
4,101,795 + ABIE53_003647 0.35 -0.3
4,101,795 + ABIE53_003647 0.35 +2.1
4,101,795 + ABIE53_003647 0.35 +0.7
4,101,795 + ABIE53_003647 0.35 +1.1
4,101,796 - ABIE53_003647 0.35 -0.0
4,101,796 - ABIE53_003647 0.35 +0.5
4,101,796 - ABIE53_003647 0.35 +0.9
4,101,796 - ABIE53_003647 0.35 +0.7
4,101,796 - ABIE53_003647 0.35 +0.2
4,101,798 + ABIE53_003647 0.35 +1.7
4,101,798 + ABIE53_003647 0.35 +1.0
4,101,798 + ABIE53_003647 0.35 -0.4
4,101,798 + ABIE53_003647 0.35 +0.1
4,101,798 + ABIE53_003647 0.35 -0.5
4,101,799 - ABIE53_003647 0.35 +1.3
4,101,799 - ABIE53_003647 0.35 +2.1
4,101,799 - ABIE53_003647 0.35 -1.5
4,101,799 - ABIE53_003647 0.35 -0.2
4,101,799 - ABIE53_003647 0.35 +0.7
4,101,799 - ABIE53_003647 0.35 -0.6
4,101,837 + ABIE53_003647 0.37 +0.4
4,101,837 + ABIE53_003647 0.37 -0.3
4,101,838 - ABIE53_003647 0.37 +0.6
4,101,838 - ABIE53_003647 0.37 -0.7
4,101,838 - ABIE53_003647 0.37 +2.1
4,101,838 - ABIE53_003647 0.37 -1.0
4,101,840 + ABIE53_003647 0.37 -0.1
4,101,840 + ABIE53_003647 0.37 +0.5
4,101,840 + ABIE53_003647 0.37 -0.2
4,101,840 + ABIE53_003647 0.37 +1.5
4,101,840 + ABIE53_003647 0.37 +1.8
4,101,840 + ABIE53_003647 0.37 +0.7
4,101,840 + ABIE53_003647 0.37 -1.2
4,101,841 - ABIE53_003647 0.37 +0.8
4,101,841 - ABIE53_003647 0.37 -0.2
4,101,841 - ABIE53_003647 0.37 +0.1
4,101,841 - ABIE53_003647 0.37 +1.5
4,101,841 - ABIE53_003647 0.37 -1.6
4,101,841 - ABIE53_003647 0.37 +0.3
4,101,841 - ABIE53_003647 0.37 +0.5
4,101,841 - ABIE53_003647 0.37 +0.1
4,101,841 - ABIE53_003647 0.37 +1.4
4,101,841 - ABIE53_003647 0.37 +0.4
4,101,939 + ABIE53_003647 0.43 -0.8
4,101,940 - ABIE53_003647 0.43 -0.5
4,101,940 - ABIE53_003647 0.43 +3.1
4,101,987 + ABIE53_003647 0.46 +2.1
4,101,987 + ABIE53_003647 0.46 -1.2
4,101,987 + ABIE53_003647 0.46 +0.7
4,101,987 + ABIE53_003647 0.46 +1.5
4,101,988 - ABIE53_003647 0.46 +0.4
4,101,988 - ABIE53_003647 0.46 +3.1
4,101,988 - ABIE53_003647 0.46 -0.7
4,101,988 - ABIE53_003647 0.46 -0.1
4,101,990 + ABIE53_003647 0.46 -1.0
4,101,990 + ABIE53_003647 0.46 -0.1
4,101,990 + ABIE53_003647 0.46 -0.0
4,101,990 + ABIE53_003647 0.46 +0.3
4,101,990 + ABIE53_003647 0.46 -0.8
4,101,990 + ABIE53_003647 0.46 -0.2
4,101,990 + ABIE53_003647 0.46 -1.3
4,101,991 - ABIE53_003647 0.46 -0.2
4,101,991 - ABIE53_003647 0.46 +1.8
4,101,991 - ABIE53_003647 0.46 +1.3

Or see this region's nucleotide sequence