Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003375

Experiment: RCH2_defined_glucose_5mM with Shikimic Acid 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Shikimic Acid 5 mM
3,796,179	+		ABIE53_003374	0.23	-1.0
3,796,179	+		ABIE53_003374	0.23	-1.9
3,796,180	-		ABIE53_003374	0.23	+2.0
3,796,180	-		ABIE53_003374	0.23	-1.0
3,796,236	+		ABIE53_003374	0.28	-0.6
3,796,253	-		ABIE53_003374	0.29	-0.3
3,796,253	-		ABIE53_003374	0.29	-0.6
3,796,258	+		ABIE53_003374	0.30	+0.4
3,796,258	+		ABIE53_003374	0.30	-2.2
3,796,258	+		ABIE53_003374	0.30	+1.0
3,796,258	+		ABIE53_003374	0.30	-0.8
3,796,258	+		ABIE53_003374	0.30	+1.0
3,796,258	+		ABIE53_003374	0.30	-0.8
3,796,258	+		ABIE53_003374	0.30	-2.1
3,796,258	+		ABIE53_003374	0.30	-0.9
3,796,259	-		ABIE53_003374	0.30	-1.2
3,796,259	-		ABIE53_003374	0.30	+1.6
3,796,259	-		ABIE53_003374	0.30	-1.6
3,796,259	-		ABIE53_003374	0.30	-1.3
3,796,259	-		ABIE53_003374	0.30	-1.4
3,796,259	-		ABIE53_003374	0.30	-1.2
3,796,259	-		ABIE53_003374	0.30	+0.7
3,796,259	-		ABIE53_003374	0.30	+3.0
3,796,259	-		ABIE53_003374	0.30	-1.7
3,796,279	+		ABIE53_003374	0.31	-0.8
3,796,279	+		ABIE53_003374	0.31	-1.4
3,796,279	+		ABIE53_003374	0.31	+0.1
3,796,279	+		ABIE53_003374	0.31	-3.2
3,796,279	+		ABIE53_003374	0.31	-0.2
3,796,279	+		ABIE53_003374	0.31	+1.0
3,796,279	+		ABIE53_003374	0.31	-1.8
3,796,279	+		ABIE53_003374	0.31	-0.9
3,796,279	+		ABIE53_003374	0.31	+0.4
3,796,280	-		ABIE53_003374	0.31	-1.1
3,796,280	-		ABIE53_003374	0.31	-1.0
3,796,280	-		ABIE53_003374	0.31	-1.7
3,796,280	-		ABIE53_003374	0.31	-1.6
3,796,280	-		ABIE53_003374	0.31	-1.3
3,796,280	-		ABIE53_003374	0.31	+0.0
3,796,280	-		ABIE53_003374	0.31	-1.4
3,796,280	-		ABIE53_003374	0.31	-1.8
3,796,280	-		ABIE53_003374	0.31	-0.4
3,796,309	+		ABIE53_003374	0.34	+1.0
3,796,309	+		ABIE53_003374	0.34	-0.8
3,796,309	+		ABIE53_003374	0.34	-1.6
3,796,309	+		ABIE53_003374	0.34	+0.6
3,796,309	+		ABIE53_003374	0.34	+0.0
3,796,310	-		ABIE53_003374	0.34	+0.4
3,796,310	-		ABIE53_003374	0.34	-1.2
3,796,310	-		ABIE53_003374	0.34	+0.0
3,796,310	-		ABIE53_003374	0.34	-2.5
3,796,310	-		ABIE53_003374	0.34	-0.4
3,796,321	+		ABIE53_003374	0.35	-2.8
3,796,322	-		ABIE53_003374	0.35	+0.3
3,796,660	+		ABIE53_003374	0.63	-0.7
3,796,660	+		ABIE53_003374	0.63	-1.0
3,796,661	-		ABIE53_003374	0.63	+0.4
3,796,780	+		ABIE53_003374	0.73	-1.9
3,796,780	+		ABIE53_003374	0.73	+1.0
3,796,780	+		ABIE53_003374	0.73	+1.0
3,796,780	+		ABIE53_003374	0.73	-3.2
3,796,780	+		ABIE53_003374	0.73	-0.8
3,796,780	+		ABIE53_003374	0.73	-1.6
3,796,781	-		ABIE53_003374	0.73	-0.7
3,796,781	-		ABIE53_003374	0.73	-1.2
3,796,781	-		ABIE53_003374	0.73	-0.7
3,796,781	-		ABIE53_003374	0.73	-1.7
3,796,781	-		ABIE53_003374	0.73	+1.4
3,796,781	-		ABIE53_003374	0.73	+0.0
3,796,781	-		ABIE53_003374	0.73	-0.4
3,796,882	+		ABIE53_003374	0.81	+0.0
3,796,882	+		ABIE53_003374	0.81	-1.3
3,796,883	-		ABIE53_003374	0.81	-0.2
3,796,883	-		ABIE53_003374	0.81	+1.0
3,796,981	+		ABIE53_003374	0.89	-1.6
3,796,981	+		ABIE53_003374	0.89	+0.2
3,796,982	-		ABIE53_003374	0.89	-1.6
3,796,982	-		ABIE53_003374	0.89	-1.3
3,796,982	-		ABIE53_003374	0.89	-2.4
3,796,982	-		ABIE53_003374	0.89	-0.3
3,796,982	-		ABIE53_003374	0.89	-1.3
3,796,999	+				-0.3
3,796,999	+				+3.0
3,796,999	+				+0.7
3,796,999	+				-0.9
3,796,999	+				-1.2
3,797,000	-				+0.2
3,797,000	-				-0.6
3,797,029	+				-1.3
3,797,029	+				+0.2
3,797,029	+				-1.2
3,797,029	+				+0.4
3,797,030	-				+0.7
3,797,030	-				-1.1
3,797,030	-				-1.2
3,797,030	-				-0.4
3,797,030	-				-1.9
3,797,030	-				+0.0
3,797,030	-				-1.3
3,797,089	+				-0.9
3,797,089	+				-2.0
3,797,089	+				+1.6
3,797,089	+				-1.6
3,797,090	-				-0.8
3,797,090	-				+0.3
3,797,090	-				-0.9
3,797,090	-				+0.7
3,797,090	-				-1.0
3,797,090	-				+0.4
3,797,090	-				+0.0
3,797,095	+				-0.2
3,797,095	+				-0.6
3,797,095	+				-0.3
3,797,095	+				+0.4
3,797,095	+				+2.0
3,797,095	+				-0.4
3,797,095	+				-0.7
3,797,095	+				+0.4
3,797,095	+				-1.2
3,797,096	-				-1.2
3,797,096	-				+0.4
3,797,096	-				-0.9
3,797,096	-				-0.3
3,797,096	-				-1.4
3,797,096	-				-0.4
3,797,135	+				-0.8
3,797,135	+				-1.6
3,797,135	+				-0.1
3,797,157	+				-0.2
3,797,157	+				+0.7
3,797,157	+				-0.7
3,797,157	+				-1.1
3,797,157	+				-1.8
3,797,157	+				-0.5
3,797,157	+				+1.0
3,797,157	+				+1.0
3,797,157	+				+3.0
3,797,157	+				-0.3
3,797,157	+				+0.3
3,797,158	-				-0.2
3,797,158	-				-0.7
3,797,158	-				-1.4
3,797,158	-				+2.8
3,797,158	-				+0.3
3,797,158	-				-1.8
3,797,158	-				-1.4
3,797,158	-				-0.3
3,797,158	-				-1.0
3,797,158	-				+1.6
3,797,158	-				+0.6
3,797,158	-				-0.3
3,797,158	-				+0.5
3,797,160	+				+1.0
3,797,160	+				-0.8
3,797,160	+				-0.3
3,797,160	+				+1.2
3,797,160	+				+0.5
3,797,161	-				+2.0
3,797,161	-				+1.2
3,797,161	-				-0.0
3,797,161	-				+0.1
3,797,427	+		ABIE53_003375	0.20	+0.3
3,797,427	+		ABIE53_003375	0.20	-0.7
3,797,428	-		ABIE53_003375	0.20	+0.5
3,797,428	-		ABIE53_003375	0.20	+0.1
3,797,470	+		ABIE53_003375	0.23	+0.4
3,797,470	+		ABIE53_003375	0.23	-0.2
3,797,471	-		ABIE53_003375	0.23	+0.6
3,797,471	-		ABIE53_003375	0.23	+0.2
3,797,471	-		ABIE53_003375	0.23	-0.2
3,797,471	-		ABIE53_003375	0.23	+0.2
3,797,525	-		ABIE53_003375	0.27	+0.6
3,797,610	+		ABIE53_003375	0.33	+0.5
3,797,610	+		ABIE53_003375	0.33	-2.4
3,797,611	-		ABIE53_003375	0.33	+0.7
3,797,611	-		ABIE53_003375	0.33	+0.2
3,797,611	-		ABIE53_003375	0.33	-0.7
3,797,611	-		ABIE53_003375	0.33	+0.4
3,797,694	-		ABIE53_003375	0.39	+1.4
3,797,694	-		ABIE53_003375	0.39	-0.4
3,797,705	+		ABIE53_003375	0.40	-1.0
3,797,705	+		ABIE53_003375	0.40	+0.2
3,797,706	-		ABIE53_003375	0.40	-0.6
3,797,706	-		ABIE53_003375	0.40	+0.6
3,797,792	+		ABIE53_003375	0.47	-0.2
3,797,793	-		ABIE53_003375	0.47	+1.3
3,797,793	-		ABIE53_003375	0.47	-0.4
3,797,793	-		ABIE53_003375	0.47	-0.7
3,797,816	+		ABIE53_003375	0.48	-1.2
3,797,816	+		ABIE53_003375	0.48	+1.0
3,797,816	+		ABIE53_003375	0.48	+0.0
3,797,817	-		ABIE53_003375	0.48	+0.6
3,797,825	+		ABIE53_003375	0.49	+2.8
3,797,825	+		ABIE53_003375	0.49	+0.0
3,797,825	+		ABIE53_003375	0.49	+0.2
3,797,826	-		ABIE53_003375	0.49	+0.2
3,798,125	+		ABIE53_003375	0.71	-0.6
3,798,125	+		ABIE53_003375	0.71	+1.0
3,798,126	-		ABIE53_003375	0.71	+0.8
3,798,126	-		ABIE53_003375	0.71	+0.7
3,798,126	-		ABIE53_003375	0.71	-2.4
3,798,126	-		ABIE53_003375	0.71	+0.9
3,798,126	-		ABIE53_003375	0.71	+0.0
3,798,126	-		ABIE53_003375	0.71	+2.0
3,798,126	-		ABIE53_003375	0.71	-1.2
3,798,175	+		ABIE53_003375	0.75	+2.0
3,798,176	-		ABIE53_003375	0.75	+0.3
3,798,200	+		ABIE53_003375	0.77	-1.2
3,798,261	+		ABIE53_003375	0.81	+2.0
3,798,262	-		ABIE53_003375	0.81	+0.4
3,798,262	-		ABIE53_003375	0.81	+2.0
3,798,323	+		ABIE53_003375	0.86	-0.1
3,798,323	+		ABIE53_003375	0.86	-0.3
3,798,323	+		ABIE53_003375	0.86	+2.4
3,798,324	-		ABIE53_003375	0.86	+0.5
3,798,324	-		ABIE53_003375	0.86	-0.5
3,798,324	-		ABIE53_003375	0.86	-0.9
3,798,345	-		ABIE53_003375	0.87	+0.6
3,798,345	-		ABIE53_003375	0.87	+0.3
3,798,345	-		ABIE53_003375	0.87	+0.6
3,798,358	+		ABIE53_003375	0.88	-1.4
3,798,358	+		ABIE53_003375	0.88	+1.6
3,798,358	+		ABIE53_003375	0.88	-0.8
3,798,359	-		ABIE53_003375	0.88	+0.1
3,798,406	-				-1.0
3,798,406	-				+1.0
3,798,406	-				+0.5
3,798,416	+				+0.4
3,798,455	-				+0.2
3,798,455	-				+1.4
3,798,455	-				+0.8
3,798,519	+				+1.0
3,798,519	+				-0.2
3,798,519	+				+0.3
3,798,519	+				+1.0
3,798,520	-				+0.5
3,798,520	-				+1.6
3,798,520	-				-0.5
3,798,520	-				+0.8
3,798,520	-				+0.4
3,798,520	-				+0.5
3,798,520	-				+0.0
3,798,520	-				+2.4
3,798,520	-				-0.7
3,798,520	-				-1.0
3,798,836	+		ABIE53_003376	0.13	+0.0
3,798,836	+		ABIE53_003376	0.13	-0.8
3,798,836	+		ABIE53_003376	0.13	+1.8
3,798,836	+		ABIE53_003376	0.13	-0.2
3,798,836	+		ABIE53_003376	0.13	-0.3
3,798,836	+		ABIE53_003376	0.13	-0.2
3,798,837	-		ABIE53_003376	0.13	+0.2
3,798,837	-		ABIE53_003376	0.13	+0.7
3,798,837	-		ABIE53_003376	0.13	+0.9
3,798,837	-		ABIE53_003376	0.13	+0.5
3,798,837	-		ABIE53_003376	0.13	-0.3
3,798,837	-		ABIE53_003376	0.13	+0.4
3,798,837	-		ABIE53_003376	0.13	-0.7
3,798,863	+		ABIE53_003376	0.18	-2.6
3,798,864	-		ABIE53_003376	0.18	-1.7
3,798,864	-		ABIE53_003376	0.18	-0.3
3,798,864	-		ABIE53_003376	0.18	-0.3
3,798,875	+		ABIE53_003376	0.20	-0.8
3,798,875	+		ABIE53_003376	0.20	+2.0
3,798,875	+		ABIE53_003376	0.20	+0.1
3,798,875	+		ABIE53_003376	0.20	-0.5
3,798,875	+		ABIE53_003376	0.20	+0.0
3,798,875	+		ABIE53_003376	0.20	+0.3
3,798,876	-		ABIE53_003376	0.21	+0.6
3,798,876	-		ABIE53_003376	0.21	+0.7
3,798,876	-		ABIE53_003376	0.21	-0.3
3,798,893	+		ABIE53_003376	0.24	+1.4
3,798,893	+		ABIE53_003376	0.24	+0.1
3,798,893	+		ABIE53_003376	0.24	-0.6
3,798,893	+		ABIE53_003376	0.24	-2.4
3,798,894	-		ABIE53_003376	0.24	+0.6
3,798,894	-		ABIE53_003376	0.24	-0.1
3,798,894	-		ABIE53_003376	0.24	-0.0
3,798,894	-		ABIE53_003376	0.24	+3.6
3,798,894	-		ABIE53_003376	0.24	-0.0
3,799,023	-		ABIE53_003376	0.47	-0.2
3,799,023	-		ABIE53_003376	0.47	+1.0
3,799,041	+		ABIE53_003376	0.51	-0.1
3,799,042	-		ABIE53_003376	0.51	-1.3
3,799,042	-		ABIE53_003376	0.51	-0.7
3,799,042	-		ABIE53_003376	0.51	+1.4
3,799,042	-		ABIE53_003376	0.51	-0.0
3,799,042	-		ABIE53_003376	0.51	+0.4
3,799,103	+		ABIE53_003376	0.62	+0.6
3,799,103	+		ABIE53_003376	0.62	+0.1
3,799,103	+		ABIE53_003376	0.62	+0.9
3,799,104	-		ABIE53_003376	0.62	+1.3
3,799,104	-		ABIE53_003376	0.62	-1.3
3,799,178	+		ABIE53_003376	0.76	-0.0
3,799,178	+		ABIE53_003376	0.76	+0.2
3,799,178	+		ABIE53_003376	0.76	+0.8
3,799,178	+		ABIE53_003376	0.76	-1.0
3,799,178	+		ABIE53_003376	0.76	-1.3
3,799,179	-		ABIE53_003376	0.76	+0.1
3,799,179	-		ABIE53_003376	0.76	+1.3
3,799,179	-		ABIE53_003376	0.76	+0.6
3,799,179	-		ABIE53_003376	0.76	-2.2
3,799,247	+		ABIE53_003376	0.88	-0.6
3,799,248	-		ABIE53_003376	0.88	-0.3
3,799,248	-		ABIE53_003376	0.88	-0.2
3,799,248	-		ABIE53_003376	0.88	-0.2
3,799,385	+				+0.0
3,799,385	+				-1.6
3,799,399	-				+0.7
3,799,454	-				+0.4
3,799,454	-				+0.7
3,799,482	+				+0.3
3,799,482	+				-0.3
3,799,483	-				-0.4
3,799,483	-				-0.3