Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0135

Experiment: MoYLS4 with Glycerol 50mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcas1 and DVUA0135 overlap by 14 nucleotidesDVUA0135 and 11427099 are separated by 178 nucleotides11427099 and 11569462 overlap by 32 nucleotides11569462 and 11711854 overlap by 32 nucleotides11711854 and 11427100 are separated by 0 nucleotides11427100 and 11569463 overlap by 33 nucleotides11569463 and 11711855 overlap by 33 nucleotides11711855 and 11427101 are separated by 0 nucleotides11427101 and 11569464 overlap by 32 nucleotides11569464 and 11711856 overlap by 32 nucleotides11711856 and 11427102 are separated by 0 nucleotides11427102 and 11569465 overlap by 35 nucleotides11569465 and 11711857 overlap by 35 nucleotides11711857 and 11427103 are separated by 0 nucleotides11427103 and 11569466 overlap by 32 nucleotides11569466 and 11711858 overlap by 32 nucleotides11711858 and 11427104 are separated by 0 nucleotides11427104 and 11569467 overlap by 36 nucleotides11569467 and 11711859 overlap by 36 nucleotides11711859 and 11427105 are separated by 0 nucleotides11427105 and 11569468 overlap by 32 nucleotides11569468 and 11711860 overlap by 32 nucleotides11711860 and 11427106 are separated by 0 nucleotides11427106 and 11569469 overlap by 33 nucleotides11569469 and 11711861 overlap by 33 nucleotides11711861 and 11427107 are separated by 0 nucleotides11427107 and 11569470 overlap by 32 nucleotides11569470 and 11711862 overlap by 32 nucleotides11711862 and 11427108 are separated by 0 nucleotides11427108 and 11569471 overlap by 34 nucleotides11569471 and 11711863 overlap by 34 nucleotides11711863 and 11427109 are separated by 0 nucleotides11427109 and 11569472 overlap by 32 nucleotides11569472 and 11711864 overlap by 32 nucleotides11711864 and 11427110 are separated by 0 nucleotides11427110 and 11569473 overlap by 32 nucleotides11569473 and 11711865 overlap by 32 nucleotides11711865 and 11427111 are separated by 0 nucleotides11427111 and 11569474 overlap by 32 nucleotides11569474 and 11711866 overlap by 32 nucleotides11711866 and 11427112 are separated by 0 nucleotides11427112 and 11569475 overlap by 34 nucleotides11569475 and 11711867 overlap by 34 nucleotides11711867 and 11427113 are separated by 0 nucleotides11427113 and 11569476 overlap by 32 nucleotides11569476 and 11711868 overlap by 32 nucleotides11711868 and 11427114 are separated by 0 nucleotides11427114 and 11569477 overlap by 35 nucleotides11569477 and 11711869 overlap by 35 nucleotides11711869 and 11427115 are separated by 0 nucleotides11427115 and 11569478 overlap by 32 nucleotides11569478 and 11711870 overlap by 32 nucleotides11711870 and 11427116 are separated by 0 nucleotides11427116 and 11569479 overlap by 35 nucleotides11569479 and 11711871 overlap by 35 nucleotides11711871 and 11427117 are separated by 0 nucleotides11427117 and 11569480 overlap by 32 nucleotides11569480 and 11711872 overlap by 32 nucleotides11711872 and 11427118 are separated by 0 nucleotides11427118 and 11569481 overlap by 35 nucleotides11569481 and 11711873 overlap by 35 nucleotides11711873 and 11427119 are separated by 0 nucleotides11427119 and 11569482 overlap by 32 nucleotides11569482 and 11711874 overlap by 32 nucleotides11711874 and 11427120 are separated by 0 nucleotides11427120 and 11569483 overlap by 35 nucleotides11569483 and 11711875 overlap by 35 nucleotides11711875 and 11427121 are separated by 0 nucleotides11427121 and 11569484 overlap by 32 nucleotides11569484 and 11711876 overlap by 32 nucleotides11711876 and 11427122 are separated by 0 nucleotides11427122 and 11569485 overlap by 33 nucleotides11569485 and 11711877 overlap by 33 nucleotides11711877 and 11427123 are separated by 0 nucleotides DVUA0134: cas1 - CRISPR-associated protein Cas1 (TIGR), at 174,393 to 175,424 cas1 DVUA0135: DVUA0135 - CRISPR-associated protein Cas2 (TIGR), at 175,411 to 175,719 DVUA0135 11427099 - no description, at 175,898 to 175,929 11427099 11569462 - no description, at 175,898 to 175,929 11569462 11711854 - no description, at 175,898 to 175,929 11711854 11427100 - no description, at 175,930 to 175,962 11427100 11569463 - no description, at 175,930 to 175,962 11569463 11711855 - no description, at 175,930 to 175,962 11711855 11427101 - no description, at 175,963 to 175,994 11427101 11569464 - no description, at 175,963 to 175,994 11569464 11711856 - no description, at 175,963 to 175,994 11711856 11427102 - no description, at 175,995 to 176,029 11427102 11569465 - no description, at 175,995 to 176,029 11569465 11711857 - no description, at 175,995 to 176,029 11711857 11427103 - no description, at 176,030 to 176,061 11427103 11569466 - no description, at 176,030 to 176,061 11569466 11711858 - no description, at 176,030 to 176,061 11711858 11427104 - no description, at 176,062 to 176,097 11427104 11569467 - no description, at 176,062 to 176,097 11569467 11711859 - no description, at 176,062 to 176,097 11711859 11427105 - no description, at 176,098 to 176,129 11427105 11569468 - no description, at 176,098 to 176,129 11569468 11711860 - no description, at 176,098 to 176,129 11711860 11427106 - no description, at 176,130 to 176,162 11427106 11569469 - no description, at 176,130 to 176,162 11569469 11711861 - no description, at 176,130 to 176,162 11711861 11427107 - no description, at 176,163 to 176,194 11427107 11569470 - no description, at 176,163 to 176,194 11569470 11711862 - no description, at 176,163 to 176,194 11711862 11427108 - no description, at 176,195 to 176,228 11427108 11569471 - no description, at 176,195 to 176,228 11569471 11711863 - no description, at 176,195 to 176,228 11711863 11427109 - no description, at 176,229 to 176,260 11427109 11569472 - no description, at 176,229 to 176,260 11569472 11711864 - no description, at 176,229 to 176,260 11711864 11427110 - no description, at 176,261 to 176,292 11427110 11569473 - no description, at 176,261 to 176,292 11569473 11711865 - no description, at 176,261 to 176,292 11711865 11427111 - no description, at 176,293 to 176,324 11427111 11569474 - no description, at 176,293 to 176,324 11569474 11711866 - no description, at 176,293 to 176,324 11711866 11427112 - no description, at 176,325 to 176,358 11427112 11569475 - no description, at 176,325 to 176,358 11569475 11711867 - no description, at 176,325 to 176,358 11711867 11427113 - no description, at 176,359 to 176,390 11427113 11569476 - no description, at 176,359 to 176,390 11569476 11711868 - no description, at 176,359 to 176,390 11711868 11427114 - no description, at 176,391 to 176,425 11427114 11569477 - no description, at 176,391 to 176,425 11569477 11711869 - no description, at 176,391 to 176,425 11711869 11427115 - no description, at 176,426 to 176,457 11427115 11569478 - no description, at 176,426 to 176,457 11569478 11711870 - no description, at 176,426 to 176,457 11711870 11427116 - no description, at 176,458 to 176,492 11427116 11569479 - no description, at 176,458 to 176,492 11569479 11711871 - no description, at 176,458 to 176,492 11711871 11427117 - no description, at 176,493 to 176,524 11427117 11569480 - no description, at 176,493 to 176,524 11569480 11711872 - no description, at 176,493 to 176,524 11711872 11427118 - no description, at 176,525 to 176,559 11427118 11569481 - no description, at 176,525 to 176,559 11569481 11711873 - no description, at 176,525 to 176,559 11711873 11427119 - no description, at 176,560 to 176,591 11427119 11569482 - no description, at 176,560 to 176,591 11569482 11711874 - no description, at 176,560 to 176,591 11711874 11427120 - no description, at 176,592 to 176,626 11427120 11569483 - no description, at 176,592 to 176,626 11569483 11711875 - no description, at 176,592 to 176,626 11711875 11427121 - no description, at 176,627 to 176,658 11427121 11569484 - no description, at 176,627 to 176,658 11569484 11711876 - no description, at 176,627 to 176,658 11711876 11427122 - no description, at 176,659 to 176,691 11427122 11569485 - no description, at 176,659 to 176,691 11569485 11711877 - no description, at 176,659 to 176,691 11711877 11427123 - no description, at 176,692 to 176,723 11427123 11569486 - no description, at 176,692 to 176,723 11569486 11711878 - no description, at 176,692 to 176,723 11711878 Position (kb) 175 176Strain fitness (log2 ratio) -1 0 1 2 3 4at 174.412 kb on - strandat 174.442 kb on + strandat 174.450 kb on - strandat 174.473 kb on + strandat 174.548 kb on - strand, within cas1at 174.558 kb on - strand, within cas1at 174.630 kb on + strand, within cas1at 174.660 kb on - strand, within cas1at 174.677 kb on + strand, within cas1at 174.711 kb on - strand, within cas1at 174.780 kb on - strand, within cas1at 174.859 kb on - strand, within cas1at 174.906 kb on + strand, within cas1at 174.906 kb on + strand, within cas1at 174.984 kb on + strand, within cas1at 175.024 kb on - strand, within cas1at 175.033 kb on + strand, within cas1at 175.041 kb on - strand, within cas1at 175.052 kb on + strand, within cas1at 175.125 kb on - strand, within cas1at 175.142 kb on + strand, within cas1at 175.271 kb on - strand, within cas1at 175.333 kb on + strandat 175.341 kb on - strandat 175.356 kb on - strandat 175.559 kb on + strand, within DVUA0135at 175.559 kb on + strand, within DVUA0135at 175.559 kb on + strand, within DVUA0135at 175.637 kb on - strand, within DVUA0135at 175.806 kb on - strandat 175.806 kb on - strandat 175.827 kb on - strandat 175.837 kb on + strandat 175.873 kb on - strandat 176.267 kb on + strandat 176.284 kb on + strandat 176.284 kb on + strandat 176.310 kb on + strandat 176.316 kb on + strandat 176.352 kb on + strandat 176.449 kb on + strandat 176.500 kb on - strandat 176.637 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Glycerol 50mM
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174,412 - +0.1
174,442 + +0.9
174,450 - +0.2
174,473 + -0.1
174,548 - cas1 DVUA0134 0.15 -1.0
174,558 - cas1 DVUA0134 0.16 +1.3
174,630 + cas1 DVUA0134 0.23 -0.6
174,660 - cas1 DVUA0134 0.26 -0.7
174,677 + cas1 DVUA0134 0.28 +1.7
174,711 - cas1 DVUA0134 0.31 -0.1
174,780 - cas1 DVUA0134 0.38 -0.7
174,859 - cas1 DVUA0134 0.45 -0.9
174,906 + cas1 DVUA0134 0.50 -0.6
174,906 + cas1 DVUA0134 0.50 +0.2
174,984 + cas1 DVUA0134 0.57 +0.1
175,024 - cas1 DVUA0134 0.61 -0.2
175,033 + cas1 DVUA0134 0.62 -1.2
175,041 - cas1 DVUA0134 0.63 -0.4
175,052 + cas1 DVUA0134 0.64 -1.1
175,125 - cas1 DVUA0134 0.71 +0.5
175,142 + cas1 DVUA0134 0.73 +0.1
175,271 - cas1 DVUA0134 0.85 -0.1
175,333 + +0.4
175,341 - -0.2
175,356 - +4.7
175,559 + DVUA0135 0.48 -1.0
175,559 + DVUA0135 0.48 -0.4
175,559 + DVUA0135 0.48 -0.4
175,637 - DVUA0135 0.73 +1.2
175,806 - -0.4
175,806 - -0.2
175,827 - -0.6
175,837 + -0.8
175,873 - +0.3
176,267 + -1.2
176,284 + +1.2
176,284 + -0.2
176,310 + +0.7
176,316 + -1.2
176,352 + -0.3
176,449 + -1.3
176,500 - +0.1
176,637 + -0.1

Or see this region's nucleotide sequence