Experiment: RCH2_defined_glucose_5mM with Shikimic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004678 and ABIE53_004679 are separated by 250 nucleotides ABIE53_004679 and ABIE53_004680 are separated by 403 nucleotides
ABIE53_004678: ABIE53_004678 - Fe-S-cluster containining protein, at 859,938 to 860,723
_004678
ABIE53_004679: ABIE53_004679 - diguanylate cyclase (GGDEF)-like protein, at 860,974 to 862,137
_004679
ABIE53_004680: ABIE53_004680 - AmiR/NasT family two-component response regulator, at 862,541 to 862,789
_004680
Position (kb) 860
861
862
863 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.989 kb on - strand at 859.989 kb on - strand at 860.023 kb on - strand, within ABIE53_004678 at 860.133 kb on + strand, within ABIE53_004678 at 860.133 kb on + strand, within ABIE53_004678 at 860.133 kb on + strand, within ABIE53_004678 at 860.133 kb on + strand, within ABIE53_004678 at 860.133 kb on + strand, within ABIE53_004678 at 860.398 kb on + strand, within ABIE53_004678 at 860.398 kb on + strand, within ABIE53_004678 at 860.398 kb on + strand, within ABIE53_004678 at 860.399 kb on - strand, within ABIE53_004678 at 860.525 kb on + strand, within ABIE53_004678 at 860.549 kb on + strand, within ABIE53_004678 at 860.549 kb on + strand, within ABIE53_004678 at 860.549 kb on + strand, within ABIE53_004678 at 860.550 kb on - strand, within ABIE53_004678 at 860.550 kb on - strand, within ABIE53_004678 at 860.550 kb on - strand, within ABIE53_004678 at 860.550 kb on - strand, within ABIE53_004678 at 860.550 kb on - strand, within ABIE53_004678 at 860.610 kb on + strand, within ABIE53_004678 at 860.610 kb on + strand, within ABIE53_004678 at 860.611 kb on - strand, within ABIE53_004678 at 860.611 kb on - strand, within ABIE53_004678 at 860.611 kb on - strand, within ABIE53_004678 at 860.611 kb on - strand, within ABIE53_004678 at 860.611 kb on - strand, within ABIE53_004678 at 860.771 kb on - strand at 860.771 kb on - strand at 860.816 kb on - strand at 860.863 kb on + strand at 860.863 kb on + strand at 861.031 kb on + strand at 861.031 kb on + strand at 861.032 kb on - strand at 861.032 kb on - strand at 861.032 kb on - strand at 861.032 kb on - strand at 861.032 kb on - strand at 861.080 kb on - strand at 861.080 kb on - strand at 861.220 kb on + strand, within ABIE53_004679 at 861.221 kb on - strand, within ABIE53_004679 at 861.232 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.439 kb on + strand, within ABIE53_004679 at 861.440 kb on - strand, within ABIE53_004679 at 861.440 kb on - strand, within ABIE53_004679 at 861.440 kb on - strand, within ABIE53_004679 at 861.440 kb on - strand, within ABIE53_004679 at 861.441 kb on + strand, within ABIE53_004679 at 861.441 kb on + strand, within ABIE53_004679 at 861.442 kb on - strand, within ABIE53_004679 at 861.442 kb on - strand, within ABIE53_004679 at 861.442 kb on - strand, within ABIE53_004679 at 861.442 kb on - strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.598 kb on + strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.599 kb on - strand, within ABIE53_004679 at 861.669 kb on + strand, within ABIE53_004679 at 861.764 kb on - strand, within ABIE53_004679 at 861.773 kb on + strand, within ABIE53_004679 at 861.773 kb on + strand, within ABIE53_004679 at 861.773 kb on + strand, within ABIE53_004679 at 862.103 kb on + strand at 862.103 kb on + strand at 862.104 kb on - strand at 862.133 kb on + strand at 862.133 kb on + strand at 862.133 kb on + strand at 862.133 kb on + strand at 862.134 kb on - strand at 862.134 kb on - strand at 862.134 kb on - strand at 862.135 kb on + strand at 862.135 kb on + strand at 862.135 kb on + strand at 862.135 kb on + strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.136 kb on - strand at 862.397 kb on + strand at 862.398 kb on - strand at 862.482 kb on + strand at 862.585 kb on + strand, within ABIE53_004680 at 862.585 kb on + strand, within ABIE53_004680 at 862.586 kb on - strand, within ABIE53_004680 at 862.599 kb on - strand, within ABIE53_004680 at 862.600 kb on + strand, within ABIE53_004680 at 862.601 kb on - strand, within ABIE53_004680 at 862.601 kb on - strand, within ABIE53_004680 at 862.601 kb on - strand, within ABIE53_004680 at 862.772 kb on + strand at 862.772 kb on + strand at 862.772 kb on + strand at 862.773 kb on - strand at 862.773 kb on - strand at 862.774 kb on + strand at 862.774 kb on + strand at 862.775 kb on - strand at 862.897 kb on + strand at 862.898 kb on - strand at 862.954 kb on + strand at 862.954 kb on + strand at 862.954 kb on + strand at 862.955 kb on - strand at 863.094 kb on - strand at 863.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Shikimic Acid 5 mM remove 859,989 - -1.1 859,989 - +0.1 860,023 - ABIE53_004678 0.11 +0.1 860,133 + ABIE53_004678 0.25 +0.4 860,133 + ABIE53_004678 0.25 +0.3 860,133 + ABIE53_004678 0.25 +0.2 860,133 + ABIE53_004678 0.25 +0.6 860,133 + ABIE53_004678 0.25 -2.1 860,398 + ABIE53_004678 0.59 +0.0 860,398 + ABIE53_004678 0.59 +0.1 860,398 + ABIE53_004678 0.59 +0.1 860,399 - ABIE53_004678 0.59 +0.1 860,525 + ABIE53_004678 0.75 -0.2 860,549 + ABIE53_004678 0.78 +0.6 860,549 + ABIE53_004678 0.78 -1.7 860,549 + ABIE53_004678 0.78 -0.1 860,550 - ABIE53_004678 0.78 +0.0 860,550 - ABIE53_004678 0.78 -1.1 860,550 - ABIE53_004678 0.78 +0.6 860,550 - ABIE53_004678 0.78 +0.5 860,550 - ABIE53_004678 0.78 +1.2 860,610 + ABIE53_004678 0.85 +0.6 860,610 + ABIE53_004678 0.85 -0.7 860,611 - ABIE53_004678 0.86 +0.3 860,611 - ABIE53_004678 0.86 +0.3 860,611 - ABIE53_004678 0.86 +0.1 860,611 - ABIE53_004678 0.86 +0.2 860,611 - ABIE53_004678 0.86 -0.0 860,771 - -0.1 860,771 - +0.4 860,816 - -0.2 860,863 + -0.7 860,863 + -1.4 861,031 + -0.6 861,031 + -0.2 861,032 - -0.1 861,032 - +0.3 861,032 - +0.6 861,032 - +0.0 861,032 - -0.4 861,080 - -1.2 861,080 - +0.1 861,220 + ABIE53_004679 0.21 -0.7 861,221 - ABIE53_004679 0.21 -2.2 861,232 + ABIE53_004679 0.22 +0.4 861,439 + ABIE53_004679 0.40 +0.6 861,439 + ABIE53_004679 0.40 -0.4 861,439 + ABIE53_004679 0.40 -0.9 861,439 + ABIE53_004679 0.40 +2.0 861,439 + ABIE53_004679 0.40 +1.6 861,439 + ABIE53_004679 0.40 -0.9 861,439 + ABIE53_004679 0.40 +0.6 861,439 + ABIE53_004679 0.40 -1.8 861,439 + ABIE53_004679 0.40 -0.9 861,439 + ABIE53_004679 0.40 -0.9 861,439 + ABIE53_004679 0.40 -1.5 861,439 + ABIE53_004679 0.40 +1.6 861,439 + ABIE53_004679 0.40 +0.6 861,440 - ABIE53_004679 0.40 +0.1 861,440 - ABIE53_004679 0.40 -0.1 861,440 - ABIE53_004679 0.40 -1.1 861,440 - ABIE53_004679 0.40 +0.1 861,441 + ABIE53_004679 0.40 +0.4 861,441 + ABIE53_004679 0.40 +0.4 861,442 - ABIE53_004679 0.40 +0.1 861,442 - ABIE53_004679 0.40 -1.5 861,442 - ABIE53_004679 0.40 +0.1 861,442 - ABIE53_004679 0.40 +0.6 861,598 + ABIE53_004679 0.54 -0.4 861,598 + ABIE53_004679 0.54 -1.9 861,598 + ABIE53_004679 0.54 +0.1 861,598 + ABIE53_004679 0.54 +0.3 861,598 + ABIE53_004679 0.54 -0.7 861,598 + ABIE53_004679 0.54 +0.1 861,598 + ABIE53_004679 0.54 +0.8 861,598 + ABIE53_004679 0.54 +0.9 861,599 - ABIE53_004679 0.54 -0.4 861,599 - ABIE53_004679 0.54 -0.5 861,599 - ABIE53_004679 0.54 -0.9 861,599 - ABIE53_004679 0.54 +0.3 861,599 - ABIE53_004679 0.54 -0.1 861,599 - ABIE53_004679 0.54 -0.7 861,669 + ABIE53_004679 0.60 -2.4 861,764 - ABIE53_004679 0.68 +0.5 861,773 + ABIE53_004679 0.69 +1.3 861,773 + ABIE53_004679 0.69 -0.3 861,773 + ABIE53_004679 0.69 +0.6 862,103 + +1.6 862,103 + +0.5 862,104 - -1.7 862,133 + -0.4 862,133 + +0.7 862,133 + -1.1 862,133 + -0.6 862,134 - -1.3 862,134 - +0.7 862,134 - +0.7 862,135 + +0.2 862,135 + -0.8 862,135 + -0.4 862,135 + +0.7 862,136 - -0.3 862,136 - -1.9 862,136 - -0.1 862,136 - +1.3 862,136 - +2.7 862,397 + +2.7 862,398 - -0.3 862,482 + +0.3 862,585 + ABIE53_004680 0.18 -2.7 862,585 + ABIE53_004680 0.18 +0.1 862,586 - ABIE53_004680 0.18 -1.3 862,599 - ABIE53_004680 0.23 -1.8 862,600 + ABIE53_004680 0.24 -0.5 862,601 - ABIE53_004680 0.24 +0.7 862,601 - ABIE53_004680 0.24 -0.9 862,601 - ABIE53_004680 0.24 -2.3 862,772 + +0.4 862,772 + +0.4 862,772 + -0.0 862,773 - -0.7 862,773 - -2.8 862,774 + +1.7 862,774 + +1.5 862,775 - +0.9 862,897 + +0.0 862,898 - -1.2 862,954 + +0.1 862,954 + +0.1 862,954 + +1.6 862,955 - -1.5 863,094 - +0.8 863,125 - -0.7
Or see this region's nucleotide sequence