Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29420 and RR42_RS29425 are separated by 85 nucleotides RR42_RS29425 and RR42_RS29430 are separated by 138 nucleotides
RR42_RS29420: RR42_RS29420 - 3-methylcrotonyl-CoA carboxylase, at 1,954,717 to 1,956,717
_RS29420
RR42_RS29425: RR42_RS29425 - enoyl-CoA hydratase, at 1,956,803 to 1,957,588
_RS29425
RR42_RS29430: RR42_RS29430 - acyl-CoA synthetase, at 1,957,727 to 1,959,232
_RS29430
Position (kb) 1956
1957
1958 Strain fitness (log2 ratio) -1
0
1 at 1955.869 kb on + strand, within RR42_RS29420 at 1955.869 kb on + strand, within RR42_RS29420 at 1955.870 kb on - strand, within RR42_RS29420 at 1956.089 kb on + strand, within RR42_RS29420 at 1956.090 kb on - strand, within RR42_RS29420 at 1956.127 kb on + strand, within RR42_RS29420 at 1956.127 kb on + strand, within RR42_RS29420 at 1956.127 kb on + strand, within RR42_RS29420 at 1956.241 kb on + strand, within RR42_RS29420 at 1956.242 kb on - strand, within RR42_RS29420 at 1956.309 kb on - strand, within RR42_RS29420 at 1956.787 kb on + strand at 1957.065 kb on - strand, within RR42_RS29425 at 1957.065 kb on - strand, within RR42_RS29425 at 1957.252 kb on - strand, within RR42_RS29425 at 1957.252 kb on - strand, within RR42_RS29425 at 1957.252 kb on - strand, within RR42_RS29425 at 1957.439 kb on + strand, within RR42_RS29425 at 1957.439 kb on + strand, within RR42_RS29425 at 1957.440 kb on - strand, within RR42_RS29425 at 1957.440 kb on - strand, within RR42_RS29425 at 1957.440 kb on - strand, within RR42_RS29425 at 1957.487 kb on + strand, within RR42_RS29425 at 1957.489 kb on + strand, within RR42_RS29425 at 1957.586 kb on + strand at 1957.587 kb on - strand at 1957.587 kb on - strand at 1957.660 kb on + strand at 1957.660 kb on + strand at 1957.805 kb on + strand at 1957.805 kb on + strand at 1957.806 kb on - strand at 1957.964 kb on - strand, within RR42_RS29430 at 1958.020 kb on + strand, within RR42_RS29430 at 1958.021 kb on - strand, within RR42_RS29430 at 1958.043 kb on - strand, within RR42_RS29430 at 1958.043 kb on - strand, within RR42_RS29430 at 1958.204 kb on + strand, within RR42_RS29430 at 1958.204 kb on + strand, within RR42_RS29430 at 1958.204 kb on + strand, within RR42_RS29430 at 1958.205 kb on - strand, within RR42_RS29430 at 1958.205 kb on - strand, within RR42_RS29430 at 1958.205 kb on - strand, within RR42_RS29430 at 1958.205 kb on - strand, within RR42_RS29430
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 1,955,869 + RR42_RS29420 0.58 -0.4 1,955,869 + RR42_RS29420 0.58 -1.4 1,955,870 - RR42_RS29420 0.58 -0.4 1,956,089 + RR42_RS29420 0.69 -0.7 1,956,090 - RR42_RS29420 0.69 -0.3 1,956,127 + RR42_RS29420 0.70 -0.4 1,956,127 + RR42_RS29420 0.70 -0.0 1,956,127 + RR42_RS29420 0.70 +0.2 1,956,241 + RR42_RS29420 0.76 +0.3 1,956,242 - RR42_RS29420 0.76 -0.0 1,956,309 - RR42_RS29420 0.80 -0.9 1,956,787 + +0.9 1,957,065 - RR42_RS29425 0.33 +0.3 1,957,065 - RR42_RS29425 0.33 -1.4 1,957,252 - RR42_RS29425 0.57 +0.4 1,957,252 - RR42_RS29425 0.57 -0.1 1,957,252 - RR42_RS29425 0.57 +0.6 1,957,439 + RR42_RS29425 0.81 -1.7 1,957,439 + RR42_RS29425 0.81 -0.6 1,957,440 - RR42_RS29425 0.81 +0.3 1,957,440 - RR42_RS29425 0.81 -0.5 1,957,440 - RR42_RS29425 0.81 -0.5 1,957,487 + RR42_RS29425 0.87 -0.7 1,957,489 + RR42_RS29425 0.87 -1.2 1,957,586 + +0.1 1,957,587 - +0.7 1,957,587 - -0.0 1,957,660 + -0.2 1,957,660 + -0.1 1,957,805 + -0.0 1,957,805 + -0.0 1,957,806 - -0.6 1,957,964 - RR42_RS29430 0.16 -0.0 1,958,020 + RR42_RS29430 0.19 +0.2 1,958,021 - RR42_RS29430 0.20 +0.4 1,958,043 - RR42_RS29430 0.21 +1.3 1,958,043 - RR42_RS29430 0.21 -0.3 1,958,204 + RR42_RS29430 0.32 +0.5 1,958,204 + RR42_RS29430 0.32 -0.5 1,958,204 + RR42_RS29430 0.32 +0.6 1,958,205 - RR42_RS29430 0.32 +1.0 1,958,205 - RR42_RS29430 0.32 +0.1 1,958,205 - RR42_RS29430 0.32 -0.1 1,958,205 - RR42_RS29430 0.32 -0.7
Or see this region's nucleotide sequence