Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27710 and RR42_RS27715 are separated by 203 nucleotides RR42_RS27715 and RR42_RS27720 are separated by 17 nucleotides RR42_RS27720 and RR42_RS27725 are separated by 5 nucleotides RR42_RS27725 and RR42_RS27730 are separated by 102 nucleotides
RR42_RS27710: RR42_RS27710 - LysR family transcriptional regulator, at 1,580,794 to 1,581,705
_RS27710
RR42_RS27715: RR42_RS27715 - hypothetical protein, at 1,581,909 to 1,582,556
_RS27715
RR42_RS27720: RR42_RS27720 - MFS transporter, at 1,582,574 to 1,583,896
_RS27720
RR42_RS27725: RR42_RS27725 - GntR family transcriptional regulator, at 1,583,902 to 1,584,612
_RS27725
RR42_RS27730: RR42_RS27730 - 3-carboxy-cis,cis-muconate cycloisomerase, at 1,584,715 to 1,585,674
_RS27730
Position (kb) 1582
1583
1584 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1581.590 kb on + strand, within RR42_RS27710 at 1581.832 kb on + strand at 1582.041 kb on + strand, within RR42_RS27715 at 1582.068 kb on + strand, within RR42_RS27715 at 1582.081 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.120 kb on - strand, within RR42_RS27715 at 1582.345 kb on - strand, within RR42_RS27715 at 1582.369 kb on + strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.370 kb on - strand, within RR42_RS27715 at 1582.515 kb on + strand at 1582.685 kb on + strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.701 kb on - strand at 1582.703 kb on - strand at 1582.787 kb on + strand, within RR42_RS27720 at 1582.787 kb on + strand, within RR42_RS27720 at 1582.787 kb on + strand, within RR42_RS27720 at 1582.788 kb on - strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.928 kb on + strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1582.929 kb on - strand, within RR42_RS27720 at 1583.119 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.399 kb on + strand, within RR42_RS27720 at 1583.400 kb on - strand, within RR42_RS27720 at 1583.400 kb on - strand, within RR42_RS27720 at 1583.526 kb on + strand, within RR42_RS27720 at 1583.528 kb on + strand, within RR42_RS27720 at 1583.528 kb on + strand, within RR42_RS27720 at 1583.651 kb on + strand, within RR42_RS27720 at 1583.652 kb on - strand, within RR42_RS27720 at 1583.702 kb on + strand, within RR42_RS27720 at 1583.723 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.725 kb on + strand, within RR42_RS27720 at 1583.816 kb on + strand at 1583.816 kb on + strand at 1583.816 kb on + strand at 1583.817 kb on - strand at 1584.292 kb on + strand, within RR42_RS27725 at 1584.537 kb on + strand, within RR42_RS27725 at 1584.539 kb on + strand, within RR42_RS27725 at 1584.540 kb on - strand, within RR42_RS27725 at 1584.540 kb on - strand, within RR42_RS27725 at 1584.666 kb on + strand at 1584.666 kb on + strand at 1584.667 kb on - strand at 1584.717 kb on - strand at 1584.803 kb on + strand at 1584.890 kb on + strand, within RR42_RS27730
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 1,581,590 + RR42_RS27710 0.87 -0.4 1,581,832 + +0.1 1,582,041 + RR42_RS27715 0.20 -2.2 1,582,068 + RR42_RS27715 0.25 -1.0 1,582,081 - RR42_RS27715 0.27 +0.5 1,582,120 - RR42_RS27715 0.33 -0.2 1,582,120 - RR42_RS27715 0.33 -2.1 1,582,345 - RR42_RS27715 0.67 +0.5 1,582,369 + RR42_RS27715 0.71 -1.0 1,582,370 - RR42_RS27715 0.71 -1.1 1,582,370 - RR42_RS27715 0.71 +0.1 1,582,515 + -0.0 1,582,685 + -0.7 1,582,701 - -1.2 1,582,701 - -1.2 1,582,701 - -1.0 1,582,703 - -0.0 1,582,787 + RR42_RS27720 0.16 -2.0 1,582,787 + RR42_RS27720 0.16 +0.9 1,582,787 + RR42_RS27720 0.16 -0.3 1,582,788 - RR42_RS27720 0.16 -0.6 1,582,928 + RR42_RS27720 0.27 +1.8 1,582,928 + RR42_RS27720 0.27 +0.0 1,582,928 + RR42_RS27720 0.27 +0.7 1,582,929 - RR42_RS27720 0.27 -0.4 1,582,929 - RR42_RS27720 0.27 +0.2 1,582,929 - RR42_RS27720 0.27 -0.1 1,582,929 - RR42_RS27720 0.27 -1.4 1,582,929 - RR42_RS27720 0.27 -0.3 1,582,929 - RR42_RS27720 0.27 +0.1 1,582,929 - RR42_RS27720 0.27 -0.5 1,582,929 - RR42_RS27720 0.27 +1.0 1,583,119 + RR42_RS27720 0.41 +0.5 1,583,399 + RR42_RS27720 0.62 -1.3 1,583,399 + RR42_RS27720 0.62 +1.9 1,583,399 + RR42_RS27720 0.62 -1.9 1,583,400 - RR42_RS27720 0.62 +0.8 1,583,400 - RR42_RS27720 0.62 +0.5 1,583,526 + RR42_RS27720 0.72 -0.2 1,583,528 + RR42_RS27720 0.72 -0.2 1,583,528 + RR42_RS27720 0.72 -0.8 1,583,651 + RR42_RS27720 0.81 -0.1 1,583,652 - RR42_RS27720 0.81 +0.6 1,583,702 + RR42_RS27720 0.85 -0.7 1,583,723 + RR42_RS27720 0.87 -1.1 1,583,725 + RR42_RS27720 0.87 -0.0 1,583,725 + RR42_RS27720 0.87 -0.6 1,583,725 + RR42_RS27720 0.87 -0.3 1,583,816 + -0.9 1,583,816 + +1.4 1,583,816 + -0.5 1,583,817 - -0.0 1,584,292 + RR42_RS27725 0.55 +0.8 1,584,537 + RR42_RS27725 0.89 +0.9 1,584,539 + RR42_RS27725 0.90 +0.6 1,584,540 - RR42_RS27725 0.90 +1.2 1,584,540 - RR42_RS27725 0.90 -1.2 1,584,666 + -0.6 1,584,666 + -1.5 1,584,667 - +0.6 1,584,717 - -0.5 1,584,803 + +0.8 1,584,890 + RR42_RS27730 0.18 -0.2
Or see this region's nucleotide sequence