Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23750

Experiment: Carbon source Phenylacetic 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23745 and RR42_RS23750 are separated by 66 nucleotidesRR42_RS23750 and RR42_RS23755 are separated by 170 nucleotides RR42_RS23745: RR42_RS23745 - phenylacetic acid degradation protein, at 651,275 to 652,363 _RS23745 RR42_RS23750: RR42_RS23750 - aldehyde dehydrogenase, at 652,430 to 654,112 _RS23750 RR42_RS23755: RR42_RS23755 - phenylacetate--CoA ligase, at 654,283 to 655,608 _RS23755 Position (kb) 652 653 654 655Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 651.636 kb on - strand, within RR42_RS23745at 652.136 kb on + strand, within RR42_RS23745at 652.137 kb on - strand, within RR42_RS23745at 652.190 kb on + strand, within RR42_RS23745at 652.190 kb on + strand, within RR42_RS23745at 652.191 kb on - strand, within RR42_RS23745at 652.191 kb on - strand, within RR42_RS23745at 652.349 kb on + strandat 652.502 kb on + strandat 652.899 kb on + strand, within RR42_RS23750at 652.899 kb on + strand, within RR42_RS23750at 652.913 kb on + strand, within RR42_RS23750at 652.914 kb on - strand, within RR42_RS23750at 652.952 kb on + strand, within RR42_RS23750at 653.070 kb on - strand, within RR42_RS23750at 653.348 kb on + strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.349 kb on - strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.477 kb on + strand, within RR42_RS23750at 653.478 kb on - strand, within RR42_RS23750at 653.478 kb on - strand, within RR42_RS23750at 653.880 kb on - strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 653.881 kb on + strand, within RR42_RS23750at 654.110 kb on + strandat 654.110 kb on + strandat 654.111 kb on - strandat 654.142 kb on + strandat 654.143 kb on - strandat 654.143 kb on - strandat 654.330 kb on - strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.394 kb on + strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.395 kb on - strandat 654.490 kb on - strand, within RR42_RS23755at 654.490 kb on - strand, within RR42_RS23755at 654.517 kb on + strand, within RR42_RS23755at 654.518 kb on - strand, within RR42_RS23755at 654.803 kb on + strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.804 kb on - strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.853 kb on + strand, within RR42_RS23755at 654.854 kb on - strand, within RR42_RS23755at 654.854 kb on - strand, within RR42_RS23755at 654.861 kb on + strand, within RR42_RS23755at 654.862 kb on - strand, within RR42_RS23755at 655.003 kb on + strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755at 655.004 kb on - strand, within RR42_RS23755

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
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651,636 - RR42_RS23745 0.33 -0.1
652,136 + RR42_RS23745 0.79 -1.7
652,137 - RR42_RS23745 0.79 -2.9
652,190 + RR42_RS23745 0.84 -3.0
652,190 + RR42_RS23745 0.84 -3.0
652,191 - RR42_RS23745 0.84 -1.4
652,191 - RR42_RS23745 0.84 -4.7
652,349 + -2.3
652,502 + -3.1
652,899 + RR42_RS23750 0.28 -1.3
652,899 + RR42_RS23750 0.28 -1.8
652,913 + RR42_RS23750 0.29 -3.6
652,914 - RR42_RS23750 0.29 -2.1
652,952 + RR42_RS23750 0.31 -1.9
653,070 - RR42_RS23750 0.38 -1.7
653,348 + RR42_RS23750 0.55 -3.0
653,349 - RR42_RS23750 0.55 -2.7
653,349 - RR42_RS23750 0.55 -2.5
653,349 - RR42_RS23750 0.55 -2.0
653,477 + RR42_RS23750 0.62 -2.7
653,477 + RR42_RS23750 0.62 -3.0
653,477 + RR42_RS23750 0.62 -2.8
653,477 + RR42_RS23750 0.62 -0.8
653,477 + RR42_RS23750 0.62 -1.4
653,477 + RR42_RS23750 0.62 -2.6
653,478 - RR42_RS23750 0.62 +0.0
653,478 - RR42_RS23750 0.62 -4.5
653,880 - RR42_RS23750 0.86 -5.1
653,881 + RR42_RS23750 0.86 -0.8
653,881 + RR42_RS23750 0.86 -2.2
653,881 + RR42_RS23750 0.86 -1.5
654,110 + -3.8
654,110 + -0.5
654,111 - -2.7
654,142 + -2.6
654,143 - -1.7
654,143 - -2.1
654,330 - -1.1
654,394 + -0.6
654,394 + -0.9
654,394 + -2.0
654,394 + -1.3
654,394 + -3.1
654,395 - -2.9
654,395 - -2.9
654,395 - -0.5
654,395 - -2.5
654,395 - -1.2
654,395 - -0.3
654,395 - -2.2
654,490 - RR42_RS23755 0.16 +1.5
654,490 - RR42_RS23755 0.16 +0.3
654,517 + RR42_RS23755 0.18 -1.4
654,518 - RR42_RS23755 0.18 -2.5
654,803 + RR42_RS23755 0.39 +0.2
654,804 - RR42_RS23755 0.39 -1.9
654,804 - RR42_RS23755 0.39 -2.5
654,804 - RR42_RS23755 0.39 -3.0
654,853 + RR42_RS23755 0.43 -2.1
654,853 + RR42_RS23755 0.43 -2.4
654,853 + RR42_RS23755 0.43 -1.8
654,853 + RR42_RS23755 0.43 -2.2
654,854 - RR42_RS23755 0.43 -1.5
654,854 - RR42_RS23755 0.43 -1.6
654,861 + RR42_RS23755 0.44 -2.9
654,862 - RR42_RS23755 0.44 -1.3
655,003 + RR42_RS23755 0.54 -2.8
655,004 - RR42_RS23755 0.54 -2.7
655,004 - RR42_RS23755 0.54 +0.1
655,004 - RR42_RS23755 0.54 -2.5

Or see this region's nucleotide sequence