Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23320 and RR42_RS23325 are separated by 288 nucleotides RR42_RS23325 and RR42_RS23330 are separated by 53 nucleotides RR42_RS23330 and RR42_RS23335 overlap by 9 nucleotides
RR42_RS23320: RR42_RS23320 - hypothetical protein, at 562,501 to 564,165
_RS23320
RR42_RS23325: RR42_RS23325 - class D beta-lactamase, at 564,454 to 565,239
_RS23325
RR42_RS23330: RR42_RS23330 - class A beta-lactamase, at 565,293 to 566,180
_RS23330
RR42_RS23335: RR42_RS23335 - hypothetical protein, at 566,172 to 566,552
_RS23335
Position (kb) 564
565
566 Strain fitness (log2 ratio) -1
0
1 at 563.696 kb on + strand, within RR42_RS23320 at 563.697 kb on - strand, within RR42_RS23320 at 563.717 kb on + strand, within RR42_RS23320 at 563.718 kb on - strand, within RR42_RS23320 at 563.995 kb on - strand, within RR42_RS23320 at 564.257 kb on + strand at 564.369 kb on + strand at 564.369 kb on + strand at 564.667 kb on + strand, within RR42_RS23325 at 564.831 kb on + strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325 at 564.968 kb on - strand, within RR42_RS23325 at 565.596 kb on - strand, within RR42_RS23330 at 565.596 kb on - strand, within RR42_RS23330 at 565.695 kb on + strand, within RR42_RS23330 at 565.952 kb on + strand, within RR42_RS23330 at 565.952 kb on + strand, within RR42_RS23330 at 566.029 kb on - strand, within RR42_RS23330 at 566.174 kb on - strand at 566.178 kb on + strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.179 kb on - strand at 566.224 kb on - strand, within RR42_RS23335
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 563,696 + RR42_RS23320 0.72 +0.5 563,697 - RR42_RS23320 0.72 +0.2 563,717 + RR42_RS23320 0.73 +0.2 563,718 - RR42_RS23320 0.73 +0.7 563,995 - RR42_RS23320 0.90 -0.1 564,257 + -1.0 564,369 + -0.6 564,369 + -0.0 564,667 + RR42_RS23325 0.27 -1.0 564,831 + RR42_RS23325 0.48 -0.3 564,968 - RR42_RS23325 0.65 +0.0 564,968 - RR42_RS23325 0.65 -1.2 565,596 - RR42_RS23330 0.34 -0.0 565,596 - RR42_RS23330 0.34 -1.7 565,695 + RR42_RS23330 0.45 +0.1 565,952 + RR42_RS23330 0.74 -0.3 565,952 + RR42_RS23330 0.74 +0.5 566,029 - RR42_RS23330 0.83 +0.4 566,174 - -1.0 566,178 + +0.2 566,179 - +0.4 566,179 - -0.7 566,179 - +1.3 566,179 - -0.3 566,179 - +0.2 566,224 - RR42_RS23335 0.14 +1.4
Or see this region's nucleotide sequence