Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20855

Experiment: Carbon source Phenylacetic 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20850 and RR42_RS20855 are separated by 220 nucleotidesRR42_RS20855 and RR42_RS20860 are separated by 365 nucleotides RR42_RS20850: RR42_RS20850 - replication protein RepA, at 1,409 to 2,503 _RS20850 RR42_RS20855: RR42_RS20855 - cold-shock protein, at 2,724 to 2,927 _RS20855 RR42_RS20860: RR42_RS20860 - cobyrinic acid a,c-diamide synthase, at 3,293 to 3,952 _RS20860 Position (kb) 2 3Strain fitness (log2 ratio) -2 -1 0 1at 2.573 kb on + strandat 2.644 kb on + strandat 2.644 kb on + strandat 2.645 kb on - strandat 2.645 kb on - strandat 2.645 kb on - strandat 2.667 kb on - strandat 2.773 kb on - strand, within RR42_RS20855at 2.773 kb on - strand, within RR42_RS20855at 2.773 kb on - strand, within RR42_RS20855at 2.874 kb on - strand, within RR42_RS20855at 2.874 kb on - strand, within RR42_RS20855at 2.956 kb on + strandat 2.956 kb on + strandat 2.957 kb on - strandat 2.957 kb on - strandat 2.976 kb on - strandat 2.995 kb on + strandat 2.995 kb on + strandat 3.006 kb on - strandat 3.006 kb on - strandat 3.064 kb on + strandat 3.065 kb on - strandat 3.078 kb on - strandat 3.078 kb on - strandat 3.118 kb on + strandat 3.189 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
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2,573 + -2.1
2,644 + +0.9
2,644 + +0.6
2,645 - +0.9
2,645 - +1.1
2,645 - -0.8
2,667 - -1.6
2,773 - RR42_RS20855 0.24 +0.3
2,773 - RR42_RS20855 0.24 -0.2
2,773 - RR42_RS20855 0.24 +0.6
2,874 - RR42_RS20855 0.74 +0.6
2,874 - RR42_RS20855 0.74 +0.9
2,956 + +0.0
2,956 + +1.0
2,957 - +1.7
2,957 - +0.2
2,976 - +1.5
2,995 + +0.2
2,995 + -0.0
3,006 - -0.9
3,006 - +0.0
3,064 + +0.3
3,065 - -1.0
3,078 - +0.2
3,078 - +0.0
3,118 + +1.0
3,189 + -0.6

Or see this region's nucleotide sequence