Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19690 and RR42_RS19695 are separated by 172 nucleotides RR42_RS19695 and RR42_RS19700 are separated by 120 nucleotides RR42_RS19700 and RR42_RS19705 are separated by 25 nucleotides
RR42_RS19690: RR42_RS19690 - Tat pathway signal protein, at 4,253,737 to 4,254,192
_RS19690
RR42_RS19695: RR42_RS19695 - cytochrome C protein, at 4,254,365 to 4,254,694
_RS19695
RR42_RS19700: RR42_RS19700 - cytochrome C, at 4,254,815 to 4,255,828
_RS19700
RR42_RS19705: RR42_RS19705 - sulfite dehydrogenase, at 4,255,854 to 4,257,218
_RS19705
Position (kb) 4254
4255
4256 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4253.816 kb on + strand, within RR42_RS19690 at 4253.817 kb on - strand, within RR42_RS19690 at 4254.169 kb on + strand at 4254.169 kb on + strand at 4254.170 kb on - strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.366 kb on + strand at 4254.367 kb on - strand at 4254.367 kb on - strand at 4254.367 kb on - strand at 4254.367 kb on - strand at 4254.367 kb on - strand at 4254.367 kb on - strand at 4254.526 kb on - strand, within RR42_RS19695 at 4254.526 kb on - strand, within RR42_RS19695 at 4254.526 kb on - strand, within RR42_RS19695 at 4254.546 kb on + strand, within RR42_RS19695 at 4254.697 kb on + strand at 4254.698 kb on + strand at 4254.698 kb on + strand at 4254.698 kb on + strand at 4254.698 kb on + strand at 4254.699 kb on - strand at 4254.699 kb on - strand at 4254.699 kb on - strand at 4254.753 kb on + strand at 4254.964 kb on - strand, within RR42_RS19700 at 4255.036 kb on - strand, within RR42_RS19700 at 4255.389 kb on + strand, within RR42_RS19700 at 4255.390 kb on - strand, within RR42_RS19700 at 4255.404 kb on + strand, within RR42_RS19700 at 4255.461 kb on + strand, within RR42_RS19700 at 4255.461 kb on + strand, within RR42_RS19700 at 4255.462 kb on - strand, within RR42_RS19700 at 4255.806 kb on - strand at 4255.855 kb on + strand at 4255.855 kb on + strand at 4255.855 kb on + strand at 4255.856 kb on - strand at 4255.925 kb on - strand at 4255.925 kb on - strand at 4256.176 kb on + strand, within RR42_RS19705 at 4256.176 kb on + strand, within RR42_RS19705 at 4256.177 kb on - strand, within RR42_RS19705 at 4256.177 kb on - strand, within RR42_RS19705 at 4256.223 kb on - strand, within RR42_RS19705 at 4256.223 kb on - strand, within RR42_RS19705 at 4256.287 kb on + strand, within RR42_RS19705 at 4256.288 kb on - strand, within RR42_RS19705 at 4256.519 kb on - strand, within RR42_RS19705 at 4256.611 kb on + strand, within RR42_RS19705 at 4256.612 kb on - strand, within RR42_RS19705 at 4256.654 kb on + strand, within RR42_RS19705 at 4256.654 kb on + strand, within RR42_RS19705 at 4256.655 kb on - strand, within RR42_RS19705 at 4256.723 kb on - strand, within RR42_RS19705
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 4,253,816 + RR42_RS19690 0.17 -0.1 4,253,817 - RR42_RS19690 0.18 +0.2 4,254,169 + +0.0 4,254,169 + -0.3 4,254,170 - -0.5 4,254,366 + +0.9 4,254,366 + -0.6 4,254,366 + -0.1 4,254,366 + -0.0 4,254,366 + -0.3 4,254,366 + +0.8 4,254,366 + -0.5 4,254,367 - +1.2 4,254,367 - -0.1 4,254,367 - +1.0 4,254,367 - +0.3 4,254,367 - +1.0 4,254,367 - +0.6 4,254,526 - RR42_RS19695 0.49 -1.5 4,254,526 - RR42_RS19695 0.49 -1.1 4,254,526 - RR42_RS19695 0.49 -0.7 4,254,546 + RR42_RS19695 0.55 -0.1 4,254,697 + +1.0 4,254,698 + -0.3 4,254,698 + -0.8 4,254,698 + +1.4 4,254,698 + +0.1 4,254,699 - +0.2 4,254,699 - +0.4 4,254,699 - -0.2 4,254,753 + -0.4 4,254,964 - RR42_RS19700 0.15 +0.3 4,255,036 - RR42_RS19700 0.22 -1.2 4,255,389 + RR42_RS19700 0.57 +0.4 4,255,390 - RR42_RS19700 0.57 -0.4 4,255,404 + RR42_RS19700 0.58 +0.0 4,255,461 + RR42_RS19700 0.64 -1.9 4,255,461 + RR42_RS19700 0.64 +1.3 4,255,462 - RR42_RS19700 0.64 +0.4 4,255,806 - +0.1 4,255,855 + -0.1 4,255,855 + -1.8 4,255,855 + -1.2 4,255,856 - +0.1 4,255,925 - -0.5 4,255,925 - +0.2 4,256,176 + RR42_RS19705 0.24 +0.1 4,256,176 + RR42_RS19705 0.24 +1.3 4,256,177 - RR42_RS19705 0.24 +2.5 4,256,177 - RR42_RS19705 0.24 +1.6 4,256,223 - RR42_RS19705 0.27 +0.9 4,256,223 - RR42_RS19705 0.27 -0.5 4,256,287 + RR42_RS19705 0.32 -0.8 4,256,288 - RR42_RS19705 0.32 -1.1 4,256,519 - RR42_RS19705 0.49 -0.1 4,256,611 + RR42_RS19705 0.55 -3.2 4,256,612 - RR42_RS19705 0.56 +1.9 4,256,654 + RR42_RS19705 0.59 +0.8 4,256,654 + RR42_RS19705 0.59 -0.1 4,256,655 - RR42_RS19705 0.59 -1.7 4,256,723 - RR42_RS19705 0.64 +0.8
Or see this region's nucleotide sequence