Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17575

Experiment: Carbon source Phenylacetic 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17570 and RR42_RS17575 are separated by 97 nucleotidesRR42_RS17575 and RR42_RS17580 are separated by 130 nucleotides RR42_RS17570: RR42_RS17570 - glyceraldehyde-3-phosphate dehydrogenase, at 3,802,242 to 3,803,240 _RS17570 RR42_RS17575: RR42_RS17575 - transketolase, at 3,803,338 to 3,805,374 _RS17575 RR42_RS17580: RR42_RS17580 - spermidine synthase, at 3,805,505 to 3,806,341 _RS17580 Position (kb) 3803 3804 3805 3806Strain fitness (log2 ratio) -2 -1 0 1at 3803.256 kb on - strandat 3803.333 kb on - strandat 3803.333 kb on - strandat 3803.333 kb on - strandat 3805.431 kb on + strandat 3805.432 kb on - strandat 3805.432 kb on - strandat 3805.432 kb on - strandat 3805.635 kb on + strand, within RR42_RS17580at 3805.635 kb on + strand, within RR42_RS17580at 3805.635 kb on + strand, within RR42_RS17580at 3805.635 kb on + strand, within RR42_RS17580at 3805.636 kb on - strand, within RR42_RS17580at 3805.636 kb on - strand, within RR42_RS17580at 3805.636 kb on - strand, within RR42_RS17580at 3805.636 kb on - strand, within RR42_RS17580at 3805.765 kb on - strand, within RR42_RS17580at 3805.926 kb on + strand, within RR42_RS17580at 3806.072 kb on - strand, within RR42_RS17580at 3806.258 kb on + strandat 3806.258 kb on + strandat 3806.339 kb on + strandat 3806.339 kb on + strandat 3806.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
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3,803,256 - -0.4
3,803,333 - +0.9
3,803,333 - +0.9
3,803,333 - +1.5
3,805,431 + +1.3
3,805,432 - -0.2
3,805,432 - +0.3
3,805,432 - +0.2
3,805,635 + RR42_RS17580 0.16 -0.4
3,805,635 + RR42_RS17580 0.16 -0.2
3,805,635 + RR42_RS17580 0.16 -0.7
3,805,635 + RR42_RS17580 0.16 +1.4
3,805,636 - RR42_RS17580 0.16 +1.3
3,805,636 - RR42_RS17580 0.16 +0.1
3,805,636 - RR42_RS17580 0.16 -1.5
3,805,636 - RR42_RS17580 0.16 -0.6
3,805,765 - RR42_RS17580 0.31 -0.4
3,805,926 + RR42_RS17580 0.50 -0.3
3,806,072 - RR42_RS17580 0.68 +0.7
3,806,258 + +0.5
3,806,258 + +0.1
3,806,339 + -1.6
3,806,339 + -2.2
3,806,340 - -1.2

Or see this region's nucleotide sequence