Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02700 and RR42_RS02705 are separated by 127 nucleotides RR42_RS02705 and RR42_RS02710 are separated by 159 nucleotides RR42_RS02710 and RR42_RS02715 are separated by 132 nucleotides
RR42_RS02700: RR42_RS02700 - ATP-dependent DNA helicase RuvB, at 601,811 to 602,866
_RS02700
RR42_RS02705: RR42_RS02705 - Holliday junction DNA helicase RuvA, at 602,994 to 603,575
_RS02705
RR42_RS02710: RR42_RS02710 - glycerophosphodiester phosphodiesterase, at 603,735 to 604,868
_RS02710
RR42_RS02715: RR42_RS02715 - Holliday junction DNA helicase, at 605,001 to 605,546
_RS02715
Position (kb) 603
604
605 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 602.869 kb on + strand at 602.870 kb on - strand at 602.898 kb on - strand at 603.470 kb on - strand, within RR42_RS02705 at 603.581 kb on - strand at 603.581 kb on - strand at 603.581 kb on - strand at 603.581 kb on - strand at 603.581 kb on - strand at 603.581 kb on - strand at 603.581 kb on - strand at 603.679 kb on + strand at 603.679 kb on + strand at 603.680 kb on - strand at 603.680 kb on - strand at 603.680 kb on - strand at 603.697 kb on - strand at 603.749 kb on + strand at 603.914 kb on + strand, within RR42_RS02710 at 603.914 kb on + strand, within RR42_RS02710 at 603.914 kb on + strand, within RR42_RS02710 at 603.914 kb on + strand, within RR42_RS02710 at 603.915 kb on - strand, within RR42_RS02710 at 603.916 kb on + strand, within RR42_RS02710 at 603.916 kb on + strand, within RR42_RS02710 at 603.916 kb on + strand, within RR42_RS02710 at 603.916 kb on + strand, within RR42_RS02710 at 603.917 kb on - strand, within RR42_RS02710 at 604.036 kb on + strand, within RR42_RS02710 at 604.045 kb on - strand, within RR42_RS02710 at 604.081 kb on + strand, within RR42_RS02710 at 604.246 kb on + strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.247 kb on - strand, within RR42_RS02710 at 604.309 kb on + strand, within RR42_RS02710 at 604.309 kb on + strand, within RR42_RS02710 at 604.423 kb on + strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.424 kb on - strand, within RR42_RS02710 at 604.623 kb on + strand, within RR42_RS02710 at 604.623 kb on + strand, within RR42_RS02710 at 604.624 kb on - strand, within RR42_RS02710 at 604.955 kb on + strand at 604.955 kb on + strand at 604.955 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.587 kb on + strand at 605.588 kb on - strand at 605.588 kb on - strand at 605.588 kb on - strand at 605.602 kb on - strand at 605.608 kb on + strand at 605.609 kb on - strand at 605.614 kb on + strand at 605.615 kb on - strand at 605.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 602,869 + -1.9 602,870 - -0.6 602,898 - +1.0 603,470 - RR42_RS02705 0.82 -3.5 603,581 - -0.9 603,581 - +1.2 603,581 - -0.2 603,581 - +1.1 603,581 - -0.8 603,581 - +0.1 603,581 - -0.4 603,679 + +0.7 603,679 + -0.0 603,680 - -0.7 603,680 - +1.7 603,680 - -0.3 603,697 - -1.4 603,749 + -0.0 603,914 + RR42_RS02710 0.16 -1.1 603,914 + RR42_RS02710 0.16 -0.8 603,914 + RR42_RS02710 0.16 -0.3 603,914 + RR42_RS02710 0.16 +0.5 603,915 - RR42_RS02710 0.16 -0.1 603,916 + RR42_RS02710 0.16 -0.0 603,916 + RR42_RS02710 0.16 +0.7 603,916 + RR42_RS02710 0.16 +0.0 603,916 + RR42_RS02710 0.16 +1.9 603,917 - RR42_RS02710 0.16 +0.3 604,036 + RR42_RS02710 0.27 +0.5 604,045 - RR42_RS02710 0.27 +0.5 604,081 + RR42_RS02710 0.31 +0.3 604,246 + RR42_RS02710 0.45 -0.4 604,247 - RR42_RS02710 0.45 -1.2 604,247 - RR42_RS02710 0.45 -0.2 604,247 - RR42_RS02710 0.45 +1.0 604,247 - RR42_RS02710 0.45 -0.2 604,309 + RR42_RS02710 0.51 +0.3 604,309 + RR42_RS02710 0.51 -0.3 604,423 + RR42_RS02710 0.61 -0.7 604,424 - RR42_RS02710 0.61 +1.6 604,424 - RR42_RS02710 0.61 +0.1 604,424 - RR42_RS02710 0.61 -1.7 604,623 + RR42_RS02710 0.78 -1.1 604,623 + RR42_RS02710 0.78 -0.9 604,624 - RR42_RS02710 0.78 -0.5 604,955 + -0.3 604,955 + -0.2 604,955 + -0.6 605,587 + +0.6 605,587 + +0.2 605,587 + -0.8 605,587 + +0.1 605,588 - +0.8 605,588 - -0.7 605,588 - -0.3 605,602 - +0.9 605,608 + -0.9 605,609 - +0.2 605,614 + +1.3 605,615 - -0.1 605,615 - +2.1
Or see this region's nucleotide sequence