Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27335

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS27330 and RR42_RS27335 are separated by 83 nucleotidesRR42_RS27335 and RR42_RS27340 are separated by 330 nucleotides RR42_RS27330: RR42_RS27330 - ornithine cyclodeaminase, at 1,484,220 to 1,485,152 _RS27330 RR42_RS27335: RR42_RS27335 - ornithine cyclodeaminase, at 1,485,236 to 1,485,988 _RS27335 RR42_RS27340: RR42_RS27340 - membrane protein, at 1,486,319 to 1,487,857 _RS27340 Position (kb) 1485 1486Strain fitness (log2 ratio) -2 -1 0 1at 1484.312 kb on - strandat 1484.460 kb on + strand, within RR42_RS27330at 1484.460 kb on + strand, within RR42_RS27330at 1484.699 kb on - strand, within RR42_RS27330at 1484.953 kb on + strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1484.954 kb on - strand, within RR42_RS27330at 1485.035 kb on + strand, within RR42_RS27330at 1485.035 kb on + strand, within RR42_RS27330at 1485.143 kb on + strandat 1485.144 kb on - strandat 1485.158 kb on - strandat 1485.158 kb on - strandat 1485.169 kb on + strandat 1485.190 kb on + strandat 1485.190 kb on + strandat 1485.191 kb on - strandat 1485.191 kb on - strandat 1486.167 kb on - strandat 1486.264 kb on + strandat 1486.299 kb on + strandat 1486.300 kb on - strandat 1486.316 kb on + strandat 1486.316 kb on + strandat 1486.358 kb on + strandat 1486.358 kb on + strandat 1486.358 kb on + strandat 1486.663 kb on + strand, within RR42_RS27340at 1486.664 kb on - strand, within RR42_RS27340at 1486.664 kb on - strand, within RR42_RS27340at 1486.664 kb on - strand, within RR42_RS27340at 1486.667 kb on + strand, within RR42_RS27340at 1486.667 kb on + strand, within RR42_RS27340at 1486.667 kb on + strand, within RR42_RS27340at 1486.667 kb on + strand, within RR42_RS27340at 1486.668 kb on - strand, within RR42_RS27340at 1486.668 kb on - strand, within RR42_RS27340at 1486.817 kb on + strand, within RR42_RS27340at 1486.817 kb on + strand, within RR42_RS27340at 1486.818 kb on - strand, within RR42_RS27340at 1486.818 kb on - strand, within RR42_RS27340at 1486.818 kb on - strand, within RR42_RS27340at 1486.818 kb on - strand, within RR42_RS27340at 1486.943 kb on + strand, within RR42_RS27340at 1486.943 kb on + strand, within RR42_RS27340at 1486.944 kb on - strand, within RR42_RS27340at 1486.944 kb on - strand, within RR42_RS27340

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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1,484,312 - -0.7
1,484,460 + RR42_RS27330 0.26 -0.1
1,484,460 + RR42_RS27330 0.26 -1.6
1,484,699 - RR42_RS27330 0.51 -0.6
1,484,953 + RR42_RS27330 0.79 -0.2
1,484,954 - RR42_RS27330 0.79 -0.6
1,484,954 - RR42_RS27330 0.79 +0.0
1,484,954 - RR42_RS27330 0.79 -0.8
1,484,954 - RR42_RS27330 0.79 +0.8
1,485,035 + RR42_RS27330 0.87 -0.4
1,485,035 + RR42_RS27330 0.87 +0.4
1,485,143 + +0.1
1,485,144 - -0.1
1,485,158 - -0.4
1,485,158 - +0.0
1,485,169 + -0.5
1,485,190 + -0.6
1,485,190 + -1.1
1,485,191 - -0.6
1,485,191 - -0.4
1,486,167 - +0.1
1,486,264 + +0.5
1,486,299 + +0.2
1,486,300 - +1.4
1,486,316 + +0.4
1,486,316 + -0.6
1,486,358 + +0.1
1,486,358 + -0.7
1,486,358 + +1.1
1,486,663 + RR42_RS27340 0.22 -0.1
1,486,664 - RR42_RS27340 0.22 -2.0
1,486,664 - RR42_RS27340 0.22 +0.0
1,486,664 - RR42_RS27340 0.22 -0.2
1,486,667 + RR42_RS27340 0.23 +0.1
1,486,667 + RR42_RS27340 0.23 +0.4
1,486,667 + RR42_RS27340 0.23 +0.2
1,486,667 + RR42_RS27340 0.23 -0.7
1,486,668 - RR42_RS27340 0.23 +0.1
1,486,668 - RR42_RS27340 0.23 -0.1
1,486,817 + RR42_RS27340 0.32 -0.6
1,486,817 + RR42_RS27340 0.32 +0.1
1,486,818 - RR42_RS27340 0.32 +0.6
1,486,818 - RR42_RS27340 0.32 -1.0
1,486,818 - RR42_RS27340 0.32 -0.5
1,486,818 - RR42_RS27340 0.32 +0.4
1,486,943 + RR42_RS27340 0.41 +0.2
1,486,943 + RR42_RS27340 0.41 +0.2
1,486,944 - RR42_RS27340 0.41 -0.0
1,486,944 - RR42_RS27340 0.41 +0.9

Or see this region's nucleotide sequence