Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26110 and RR42_RS26115 are separated by 114 nucleotides RR42_RS26115 and RR42_RS26120 are separated by 13 nucleotides
RR42_RS26110: RR42_RS26110 - malic enzyme, at 1,208,024 to 1,210,318
_RS26110
RR42_RS26115: RR42_RS26115 - dihydrolipoamide dehydrogenase, at 1,210,433 to 1,212,202
_RS26115
RR42_RS26120: RR42_RS26120 - dihydrolipoamide acetyltransferase, at 1,212,216 to 1,213,838
_RS26120
Position (kb)
1210
1211
1212
1213 Strain fitness (log2 ratio)
-2
-1
0
1 at 1209.601 kb on - strand, within RR42_RS26110 at 1209.642 kb on + strand, within RR42_RS26110 at 1209.642 kb on + strand, within RR42_RS26110 at 1209.643 kb on - strand, within RR42_RS26110 at 1209.885 kb on + strand, within RR42_RS26110 at 1209.885 kb on + strand, within RR42_RS26110 at 1210.578 kb on - strand at 1210.797 kb on + strand, within RR42_RS26115 at 1210.830 kb on + strand, within RR42_RS26115 at 1210.830 kb on + strand, within RR42_RS26115 at 1210.970 kb on - strand, within RR42_RS26115 at 1211.061 kb on + strand, within RR42_RS26115 at 1211.061 kb on + strand, within RR42_RS26115 at 1211.062 kb on - strand, within RR42_RS26115 at 1211.484 kb on + strand, within RR42_RS26115 at 1212.004 kb on + strand, within RR42_RS26115 at 1212.387 kb on + strand, within RR42_RS26120 at 1212.388 kb on - strand, within RR42_RS26120 at 1212.632 kb on - strand, within RR42_RS26120 at 1212.632 kb on - strand, within RR42_RS26120 at 1212.632 kb on - strand, within RR42_RS26120 at 1212.632 kb on - strand, within RR42_RS26120 at 1212.635 kb on - strand, within RR42_RS26120 at 1212.801 kb on - strand, within RR42_RS26120 at 1212.837 kb on + strand, within RR42_RS26120 at 1212.838 kb on - strand, within RR42_RS26120 at 1213.129 kb on + strand, within RR42_RS26120
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 1,209,601 - RR42_RS26110 0.69 -0.1 1,209,642 + RR42_RS26110 0.71 +0.7 1,209,642 + RR42_RS26110 0.71 +0.5 1,209,643 - RR42_RS26110 0.71 +0.2 1,209,885 + RR42_RS26110 0.81 +0.8 1,209,885 + RR42_RS26110 0.81 +0.2 1,210,578 - -0.8 1,210,797 + RR42_RS26115 0.21 -0.6 1,210,830 + RR42_RS26115 0.22 +0.4 1,210,830 + RR42_RS26115 0.22 -1.0 1,210,970 - RR42_RS26115 0.30 +0.3 1,211,061 + RR42_RS26115 0.35 -0.4 1,211,061 + RR42_RS26115 0.35 +0.4 1,211,062 - RR42_RS26115 0.36 -1.8 1,211,484 + RR42_RS26115 0.59 -1.7 1,212,004 + RR42_RS26115 0.89 -1.2 1,212,387 + RR42_RS26120 0.11 -0.5 1,212,388 - RR42_RS26120 0.11 +0.5 1,212,632 - RR42_RS26120 0.26 -0.7 1,212,632 - RR42_RS26120 0.26 +0.1 1,212,632 - RR42_RS26120 0.26 -0.8 1,212,632 - RR42_RS26120 0.26 +0.1 1,212,635 - RR42_RS26120 0.26 +0.5 1,212,801 - RR42_RS26120 0.36 -0.5 1,212,837 + RR42_RS26120 0.38 -0.5 1,212,838 - RR42_RS26120 0.38 -0.7 1,213,129 + RR42_RS26120 0.56 +0.8
Or see this region's nucleotide sequence