Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24325

Experiment: Carbon source D,L-Lactate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24320 and RR42_RS24325 are separated by 10 nucleotidesRR42_RS24325 and RR42_RS24330 are separated by 170 nucleotides RR42_RS24320: RR42_RS24320 - formyl-CoA transferase, at 784,138 to 785,361 _RS24320 RR42_RS24325: RR42_RS24325 - citryl-CoA lyase, at 785,372 to 786,295 _RS24325 RR42_RS24330: RR42_RS24330 - IclR family transcriptional regulator, at 786,466 to 787,212 _RS24330 Position (kb) 785 786 787Strain fitness (log2 ratio) -3 -2 -1 0 1at 784.406 kb on + strand, within RR42_RS24320at 784.407 kb on - strand, within RR42_RS24320at 784.447 kb on + strand, within RR42_RS24320at 784.460 kb on + strand, within RR42_RS24320at 784.519 kb on + strand, within RR42_RS24320at 784.519 kb on + strand, within RR42_RS24320at 784.520 kb on - strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.567 kb on + strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.568 kb on - strand, within RR42_RS24320at 784.689 kb on + strand, within RR42_RS24320at 784.690 kb on - strand, within RR42_RS24320at 784.726 kb on - strand, within RR42_RS24320at 784.726 kb on - strand, within RR42_RS24320at 784.732 kb on - strand, within RR42_RS24320at 784.791 kb on - strand, within RR42_RS24320at 784.791 kb on - strand, within RR42_RS24320at 784.851 kb on + strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.852 kb on - strand, within RR42_RS24320at 784.902 kb on + strand, within RR42_RS24320at 784.903 kb on - strand, within RR42_RS24320at 784.940 kb on + strand, within RR42_RS24320at 784.940 kb on + strand, within RR42_RS24320at 784.941 kb on - strand, within RR42_RS24320at 784.987 kb on - strand, within RR42_RS24320at 785.007 kb on + strand, within RR42_RS24320at 785.007 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.027 kb on + strand, within RR42_RS24320at 785.028 kb on - strand, within RR42_RS24320at 785.030 kb on - strand, within RR42_RS24320at 785.058 kb on + strand, within RR42_RS24320at 785.117 kb on - strand, within RR42_RS24320at 785.178 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.193 kb on - strand, within RR42_RS24320at 785.311 kb on + strandat 785.312 kb on - strandat 785.359 kb on + strandat 785.359 kb on + strandat 785.360 kb on - strandat 785.487 kb on + strand, within RR42_RS24325at 785.488 kb on - strand, within RR42_RS24325at 785.523 kb on + strand, within RR42_RS24325at 785.524 kb on - strand, within RR42_RS24325at 785.542 kb on + strand, within RR42_RS24325at 785.543 kb on - strand, within RR42_RS24325at 785.615 kb on + strand, within RR42_RS24325at 785.615 kb on + strand, within RR42_RS24325at 785.616 kb on - strand, within RR42_RS24325at 785.616 kb on - strand, within RR42_RS24325at 785.621 kb on + strand, within RR42_RS24325at 785.622 kb on - strand, within RR42_RS24325at 785.622 kb on - strand, within RR42_RS24325at 785.629 kb on + strand, within RR42_RS24325at 785.674 kb on + strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.675 kb on - strand, within RR42_RS24325at 785.727 kb on + strand, within RR42_RS24325at 785.765 kb on - strand, within RR42_RS24325at 785.782 kb on + strand, within RR42_RS24325at 785.908 kb on + strand, within RR42_RS24325at 785.909 kb on - strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.932 kb on + strand, within RR42_RS24325at 785.933 kb on - strand, within RR42_RS24325at 785.942 kb on + strand, within RR42_RS24325at 785.942 kb on + strand, within RR42_RS24325at 786.032 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.162 kb on + strand, within RR42_RS24325at 786.163 kb on - strand, within RR42_RS24325at 786.163 kb on - strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.173 kb on + strand, within RR42_RS24325at 786.174 kb on - strand, within RR42_RS24325at 786.174 kb on - strand, within RR42_RS24325at 786.177 kb on + strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.178 kb on - strand, within RR42_RS24325at 786.208 kb on + strandat 786.259 kb on + strandat 786.259 kb on + strandat 786.259 kb on + strandat 786.260 kb on - strandat 786.260 kb on - strandat 786.260 kb on - strandat 786.285 kb on - strandat 786.293 kb on + strandat 786.299 kb on + strandat 786.299 kb on + strandat 786.299 kb on + strandat 786.318 kb on + strandat 786.349 kb on + strandat 786.350 kb on - strandat 786.356 kb on + strandat 786.357 kb on - strandat 786.365 kb on - strandat 786.384 kb on + strandat 786.387 kb on + strandat 786.387 kb on + strandat 786.472 kb on - strandat 786.563 kb on - strand, within RR42_RS24330at 786.563 kb on - strand, within RR42_RS24330at 786.576 kb on + strand, within RR42_RS24330at 786.584 kb on + strand, within RR42_RS24330at 786.585 kb on - strand, within RR42_RS24330at 786.585 kb on - strand, within RR42_RS24330at 786.587 kb on + strand, within RR42_RS24330at 786.587 kb on + strand, within RR42_RS24330at 786.587 kb on + strand, within RR42_RS24330at 786.608 kb on + strand, within RR42_RS24330at 786.623 kb on - strand, within RR42_RS24330at 786.695 kb on + strand, within RR42_RS24330at 786.696 kb on - strand, within RR42_RS24330at 786.696 kb on - strand, within RR42_RS24330at 786.717 kb on + strand, within RR42_RS24330at 786.718 kb on - strand, within RR42_RS24330at 786.718 kb on - strand, within RR42_RS24330at 786.758 kb on + strand, within RR42_RS24330at 786.759 kb on - strand, within RR42_RS24330at 786.759 kb on - strand, within RR42_RS24330at 786.784 kb on + strand, within RR42_RS24330at 786.785 kb on - strand, within RR42_RS24330at 786.785 kb on - strand, within RR42_RS24330at 786.793 kb on + strand, within RR42_RS24330at 786.794 kb on - strand, within RR42_RS24330at 786.795 kb on + strand, within RR42_RS24330at 786.796 kb on - strand, within RR42_RS24330at 786.796 kb on - strand, within RR42_RS24330at 786.796 kb on - strand, within RR42_RS24330at 786.796 kb on - strand, within RR42_RS24330at 786.796 kb on - strand, within RR42_RS24330at 786.800 kb on - strand, within RR42_RS24330at 786.837 kb on + strand, within RR42_RS24330at 786.838 kb on - strand, within RR42_RS24330at 786.882 kb on + strand, within RR42_RS24330at 786.926 kb on + strand, within RR42_RS24330at 786.926 kb on + strand, within RR42_RS24330at 786.926 kb on + strand, within RR42_RS24330at 786.963 kb on + strand, within RR42_RS24330at 786.964 kb on - strand, within RR42_RS24330at 787.003 kb on - strand, within RR42_RS24330at 787.003 kb on - strand, within RR42_RS24330at 787.022 kb on - strand, within RR42_RS24330at 787.028 kb on - strand, within RR42_RS24330at 787.038 kb on + strand, within RR42_RS24330at 787.038 kb on + strand, within RR42_RS24330at 787.039 kb on - strand, within RR42_RS24330at 787.044 kb on + strand, within RR42_RS24330at 787.044 kb on + strand, within RR42_RS24330at 787.045 kb on - strand, within RR42_RS24330at 787.115 kb on + strand, within RR42_RS24330at 787.115 kb on + strand, within RR42_RS24330at 787.137 kb on - strand, within RR42_RS24330at 787.157 kb on - strandat 787.157 kb on - strandat 787.164 kb on + strandat 787.164 kb on + strandat 787.165 kb on - strandat 787.189 kb on + strandat 787.190 kb on - strandat 787.225 kb on + strandat 787.225 kb on + strandat 787.225 kb on + strandat 787.225 kb on + strandat 787.226 kb on - strandat 787.226 kb on - strandat 787.226 kb on - strandat 787.226 kb on - strandat 787.226 kb on - strandat 787.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM
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784,406 + RR42_RS24320 0.22 -1.1
784,407 - RR42_RS24320 0.22 +0.6
784,447 + RR42_RS24320 0.25 +1.1
784,460 + RR42_RS24320 0.26 +0.7
784,519 + RR42_RS24320 0.31 +0.7
784,519 + RR42_RS24320 0.31 -0.0
784,520 - RR42_RS24320 0.31 -0.4
784,567 + RR42_RS24320 0.35 -0.0
784,567 + RR42_RS24320 0.35 +0.3
784,567 + RR42_RS24320 0.35 +0.3
784,567 + RR42_RS24320 0.35 -0.5
784,568 - RR42_RS24320 0.35 +0.2
784,568 - RR42_RS24320 0.35 +0.2
784,568 - RR42_RS24320 0.35 +1.0
784,689 + RR42_RS24320 0.45 -1.2
784,690 - RR42_RS24320 0.45 +0.7
784,726 - RR42_RS24320 0.48 +0.7
784,726 - RR42_RS24320 0.48 +0.3
784,732 - RR42_RS24320 0.49 +1.0
784,791 - RR42_RS24320 0.53 -0.2
784,791 - RR42_RS24320 0.53 -0.0
784,851 + RR42_RS24320 0.58 -0.5
784,852 - RR42_RS24320 0.58 +0.8
784,852 - RR42_RS24320 0.58 -0.2
784,852 - RR42_RS24320 0.58 +0.1
784,902 + RR42_RS24320 0.62 +0.4
784,903 - RR42_RS24320 0.62 +0.5
784,940 + RR42_RS24320 0.66 -0.5
784,940 + RR42_RS24320 0.66 -0.5
784,941 - RR42_RS24320 0.66 -1.3
784,987 - RR42_RS24320 0.69 -0.9
785,007 + RR42_RS24320 0.71 +0.2
785,007 + RR42_RS24320 0.71 -0.9
785,027 + RR42_RS24320 0.73 -1.6
785,027 + RR42_RS24320 0.73 +0.5
785,027 + RR42_RS24320 0.73 -0.2
785,028 - RR42_RS24320 0.73 -0.1
785,030 - RR42_RS24320 0.73 -0.9
785,058 + RR42_RS24320 0.75 +0.0
785,117 - RR42_RS24320 0.80 +0.7
785,178 - RR42_RS24320 0.85 +0.4
785,193 - RR42_RS24320 0.86 -0.2
785,193 - RR42_RS24320 0.86 +0.1
785,193 - RR42_RS24320 0.86 +0.9
785,193 - RR42_RS24320 0.86 +0.3
785,193 - RR42_RS24320 0.86 +1.0
785,311 + +0.6
785,312 - -0.4
785,359 + -0.4
785,359 + +0.2
785,360 - +0.0
785,487 + RR42_RS24325 0.12 -1.5
785,488 - RR42_RS24325 0.13 +1.3
785,523 + RR42_RS24325 0.16 -0.2
785,524 - RR42_RS24325 0.16 -0.5
785,542 + RR42_RS24325 0.18 +0.2
785,543 - RR42_RS24325 0.19 -0.2
785,615 + RR42_RS24325 0.26 -0.5
785,615 + RR42_RS24325 0.26 -0.9
785,616 - RR42_RS24325 0.26 +0.3
785,616 - RR42_RS24325 0.26 +1.6
785,621 + RR42_RS24325 0.27 -0.7
785,622 - RR42_RS24325 0.27 -0.0
785,622 - RR42_RS24325 0.27 +0.5
785,629 + RR42_RS24325 0.28 -0.9
785,674 + RR42_RS24325 0.33 +0.0
785,675 - RR42_RS24325 0.33 +0.5
785,675 - RR42_RS24325 0.33 -0.4
785,675 - RR42_RS24325 0.33 -1.5
785,675 - RR42_RS24325 0.33 +0.4
785,727 + RR42_RS24325 0.38 -0.0
785,765 - RR42_RS24325 0.43 +0.4
785,782 + RR42_RS24325 0.44 +0.5
785,908 + RR42_RS24325 0.58 -0.9
785,909 - RR42_RS24325 0.58 -0.6
785,932 + RR42_RS24325 0.61 +0.7
785,932 + RR42_RS24325 0.61 -2.0
785,932 + RR42_RS24325 0.61 +0.3
785,933 - RR42_RS24325 0.61 -0.2
785,942 + RR42_RS24325 0.62 -0.4
785,942 + RR42_RS24325 0.62 -2.3
786,032 + RR42_RS24325 0.71 +0.2
786,162 + RR42_RS24325 0.85 +0.4
786,162 + RR42_RS24325 0.85 +0.6
786,162 + RR42_RS24325 0.85 +0.1
786,163 - RR42_RS24325 0.86 -0.4
786,163 - RR42_RS24325 0.86 -0.2
786,173 + RR42_RS24325 0.87 -0.0
786,173 + RR42_RS24325 0.87 -1.4
786,173 + RR42_RS24325 0.87 -0.2
786,173 + RR42_RS24325 0.87 +0.7
786,173 + RR42_RS24325 0.87 +0.4
786,173 + RR42_RS24325 0.87 -0.4
786,174 - RR42_RS24325 0.87 +0.0
786,174 - RR42_RS24325 0.87 -0.5
786,177 + RR42_RS24325 0.87 +0.3
786,178 - RR42_RS24325 0.87 +0.2
786,178 - RR42_RS24325 0.87 -0.9
786,178 - RR42_RS24325 0.87 +0.6
786,208 + +1.7
786,259 + +1.2
786,259 + -0.1
786,259 + +0.4
786,260 - -0.1
786,260 - +0.2
786,260 - -1.0
786,285 - +0.0
786,293 + -0.9
786,299 + -0.0
786,299 + -2.4
786,299 + -0.6
786,318 + -0.3
786,349 + +0.7
786,350 - +0.1
786,356 + -0.4
786,357 - -0.7
786,365 - +0.2
786,384 + -0.2
786,387 + +1.0
786,387 + +0.2
786,472 - +1.3
786,563 - RR42_RS24330 0.13 -0.6
786,563 - RR42_RS24330 0.13 +0.2
786,576 + RR42_RS24330 0.15 +1.5
786,584 + RR42_RS24330 0.16 +0.8
786,585 - RR42_RS24330 0.16 +0.4
786,585 - RR42_RS24330 0.16 -0.3
786,587 + RR42_RS24330 0.16 -1.5
786,587 + RR42_RS24330 0.16 -0.2
786,587 + RR42_RS24330 0.16 -0.1
786,608 + RR42_RS24330 0.19 +0.5
786,623 - RR42_RS24330 0.21 +0.0
786,695 + RR42_RS24330 0.31 +0.3
786,696 - RR42_RS24330 0.31 +0.6
786,696 - RR42_RS24330 0.31 +0.2
786,717 + RR42_RS24330 0.34 -1.3
786,718 - RR42_RS24330 0.34 +0.2
786,718 - RR42_RS24330 0.34 +0.8
786,758 + RR42_RS24330 0.39 +0.3
786,759 - RR42_RS24330 0.39 -2.6
786,759 - RR42_RS24330 0.39 +1.0
786,784 + RR42_RS24330 0.43 -3.0
786,785 - RR42_RS24330 0.43 +0.1
786,785 - RR42_RS24330 0.43 -0.5
786,793 + RR42_RS24330 0.44 -0.5
786,794 - RR42_RS24330 0.44 -0.6
786,795 + RR42_RS24330 0.44 +0.2
786,796 - RR42_RS24330 0.44 +0.0
786,796 - RR42_RS24330 0.44 +0.7
786,796 - RR42_RS24330 0.44 +0.3
786,796 - RR42_RS24330 0.44 +0.6
786,796 - RR42_RS24330 0.44 +0.0
786,800 - RR42_RS24330 0.45 -0.2
786,837 + RR42_RS24330 0.50 +0.2
786,838 - RR42_RS24330 0.50 +0.4
786,882 + RR42_RS24330 0.56 -0.2
786,926 + RR42_RS24330 0.62 -1.3
786,926 + RR42_RS24330 0.62 +0.3
786,926 + RR42_RS24330 0.62 +1.7
786,963 + RR42_RS24330 0.67 +1.7
786,964 - RR42_RS24330 0.67 +0.0
787,003 - RR42_RS24330 0.72 -0.2
787,003 - RR42_RS24330 0.72 -0.7
787,022 - RR42_RS24330 0.74 -0.9
787,028 - RR42_RS24330 0.75 +0.5
787,038 + RR42_RS24330 0.77 -1.1
787,038 + RR42_RS24330 0.77 -0.0
787,039 - RR42_RS24330 0.77 +1.1
787,044 + RR42_RS24330 0.77 -0.9
787,044 + RR42_RS24330 0.77 -0.2
787,045 - RR42_RS24330 0.78 +0.3
787,115 + RR42_RS24330 0.87 +0.1
787,115 + RR42_RS24330 0.87 +0.3
787,137 - RR42_RS24330 0.90 -0.6
787,157 - -0.3
787,157 - -0.8
787,164 + -1.1
787,164 + -0.1
787,165 - -0.2
787,189 + -0.9
787,190 - +0.2
787,225 + +0.6
787,225 + +0.3
787,225 + -0.2
787,225 + -0.4
787,226 - -0.7
787,226 - +0.7
787,226 - -1.6
787,226 - +0.8
787,226 - -0.5
787,226 - +0.9

Or see this region's nucleotide sequence