Experiment: Carbon source D,L-Lactate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21175 and RR42_RS21180 are separated by 54 nucleotides RR42_RS21180 and RR42_RS21185 are separated by 172 nucleotides RR42_RS21185 and RR42_RS21190 are separated by 58 nucleotides RR42_RS21190 and RR42_RS21195 are separated by 67 nucleotides
RR42_RS21175: RR42_RS21175 - transporter, at 76,036 to 76,470
_RS21175
RR42_RS21180: RR42_RS21180 - GNAT family acetyltransferase, at 76,525 to 76,914
_RS21180
RR42_RS21185: RR42_RS21185 - AMP nucleosidase, at 77,087 to 78,583
_RS21185
RR42_RS21190: RR42_RS21190 - LysR family transcriptional regulator, at 78,642 to 79,085
_RS21190
RR42_RS21195: RR42_RS21195 - phosphohydrolase, at 79,153 to 79,848
_RS21195
Position (kb) 77
78
79 Strain fitness (log2 ratio) -1
0
1
2 at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.211 kb on + strand, within RR42_RS21175 at 76.212 kb on - strand, within RR42_RS21175 at 76.715 kb on + strand, within RR42_RS21180 at 76.938 kb on - strand at 77.020 kb on + strand at 77.020 kb on + strand at 77.083 kb on + strand at 77.189 kb on + strand at 77.273 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.360 kb on + strand, within RR42_RS21185 at 77.400 kb on - strand, within RR42_RS21185 at 77.402 kb on + strand, within RR42_RS21185 at 77.428 kb on - strand, within RR42_RS21185 at 77.519 kb on + strand, within RR42_RS21185 at 77.519 kb on + strand, within RR42_RS21185 at 77.520 kb on - strand, within RR42_RS21185 at 77.520 kb on - strand, within RR42_RS21185 at 77.600 kb on + strand, within RR42_RS21185 at 77.600 kb on + strand, within RR42_RS21185 at 77.601 kb on - strand, within RR42_RS21185 at 77.601 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.679 kb on - strand, within RR42_RS21185 at 77.685 kb on - strand, within RR42_RS21185 at 77.685 kb on - strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.735 kb on + strand, within RR42_RS21185 at 77.744 kb on + strand, within RR42_RS21185 at 77.814 kb on - strand, within RR42_RS21185 at 77.912 kb on + strand, within RR42_RS21185 at 77.913 kb on - strand, within RR42_RS21185 at 78.077 kb on + strand, within RR42_RS21185 at 78.078 kb on - strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.095 kb on + strand, within RR42_RS21185 at 78.096 kb on - strand, within RR42_RS21185 at 78.096 kb on - strand, within RR42_RS21185 at 78.099 kb on + strand, within RR42_RS21185 at 78.099 kb on + strand, within RR42_RS21185 at 78.100 kb on - strand, within RR42_RS21185 at 78.100 kb on - strand, within RR42_RS21185 at 78.296 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.396 kb on + strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.397 kb on - strand, within RR42_RS21185 at 78.459 kb on - strand at 78.481 kb on + strand at 78.481 kb on + strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.482 kb on - strand at 78.582 kb on - strand at 78.734 kb on + strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.735 kb on - strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.784 kb on + strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.785 kb on - strand, within RR42_RS21190 at 78.823 kb on + strand, within RR42_RS21190 at 78.824 kb on - strand, within RR42_RS21190 at 78.971 kb on - strand, within RR42_RS21190 at 79.096 kb on + strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.097 kb on - strand at 79.106 kb on - strand at 79.159 kb on - strand at 79.310 kb on + strand, within RR42_RS21195 at 79.364 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.439 kb on + strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195 at 79.440 kb on - strand, within RR42_RS21195
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D,L-Lactate 10 mM remove 76,211 + RR42_RS21175 0.40 +0.5 76,211 + RR42_RS21175 0.40 +0.3 76,211 + RR42_RS21175 0.40 -0.3 76,212 - RR42_RS21175 0.40 +0.6 76,715 + RR42_RS21180 0.49 -0.0 76,938 - +0.9 77,020 + +0.0 77,020 + -1.1 77,083 + -0.6 77,189 + +0.2 77,273 + RR42_RS21185 0.12 +2.3 77,360 + RR42_RS21185 0.18 +0.0 77,360 + RR42_RS21185 0.18 -0.4 77,400 - RR42_RS21185 0.21 -0.2 77,402 + RR42_RS21185 0.21 +0.1 77,428 - RR42_RS21185 0.23 -0.4 77,519 + RR42_RS21185 0.29 +1.9 77,519 + RR42_RS21185 0.29 -0.2 77,520 - RR42_RS21185 0.29 +1.5 77,520 - RR42_RS21185 0.29 -0.1 77,600 + RR42_RS21185 0.34 -0.7 77,600 + RR42_RS21185 0.34 +0.8 77,601 - RR42_RS21185 0.34 +0.2 77,601 - RR42_RS21185 0.34 +0.6 77,679 - RR42_RS21185 0.40 -0.4 77,679 - RR42_RS21185 0.40 -1.5 77,679 - RR42_RS21185 0.40 -0.1 77,685 - RR42_RS21185 0.40 -0.1 77,685 - RR42_RS21185 0.40 -0.2 77,735 + RR42_RS21185 0.43 -0.4 77,735 + RR42_RS21185 0.43 +0.2 77,735 + RR42_RS21185 0.43 +0.7 77,744 + RR42_RS21185 0.44 +0.2 77,814 - RR42_RS21185 0.49 +2.2 77,912 + RR42_RS21185 0.55 +0.9 77,913 - RR42_RS21185 0.55 +1.5 78,077 + RR42_RS21185 0.66 -0.4 78,078 - RR42_RS21185 0.66 -1.6 78,095 + RR42_RS21185 0.67 -0.1 78,095 + RR42_RS21185 0.67 +0.6 78,095 + RR42_RS21185 0.67 -0.1 78,095 + RR42_RS21185 0.67 +0.8 78,095 + RR42_RS21185 0.67 -1.4 78,095 + RR42_RS21185 0.67 +0.8 78,096 - RR42_RS21185 0.67 -0.0 78,096 - RR42_RS21185 0.67 +0.0 78,099 + RR42_RS21185 0.68 -1.6 78,099 + RR42_RS21185 0.68 -0.0 78,100 - RR42_RS21185 0.68 +0.5 78,100 - RR42_RS21185 0.68 +0.9 78,296 + RR42_RS21185 0.81 +0.4 78,396 + RR42_RS21185 0.87 +0.3 78,396 + RR42_RS21185 0.87 +0.3 78,396 + RR42_RS21185 0.87 +0.2 78,396 + RR42_RS21185 0.87 +0.3 78,397 - RR42_RS21185 0.88 +1.2 78,397 - RR42_RS21185 0.88 -0.0 78,459 - -0.0 78,481 + -0.2 78,481 + +0.7 78,482 - +0.1 78,482 - -0.9 78,482 - +0.3 78,482 - +0.2 78,482 - -0.5 78,582 - -1.1 78,734 + RR42_RS21190 0.21 +0.0 78,735 - RR42_RS21190 0.21 +0.3 78,735 - RR42_RS21190 0.21 +0.2 78,735 - RR42_RS21190 0.21 +0.3 78,784 + RR42_RS21190 0.32 -0.4 78,784 + RR42_RS21190 0.32 -0.3 78,785 - RR42_RS21190 0.32 +0.5 78,785 - RR42_RS21190 0.32 +0.2 78,823 + RR42_RS21190 0.41 -0.1 78,824 - RR42_RS21190 0.41 -0.5 78,971 - RR42_RS21190 0.74 -0.4 79,096 + +0.1 79,097 - +0.3 79,097 - +0.8 79,097 - +0.1 79,097 - +0.4 79,106 - +0.7 79,159 - +1.2 79,310 + RR42_RS21195 0.23 -0.2 79,364 + RR42_RS21195 0.30 +0.2 79,439 + RR42_RS21195 0.41 -0.5 79,439 + RR42_RS21195 0.41 +0.3 79,439 + RR42_RS21195 0.41 +0.6 79,439 + RR42_RS21195 0.41 -0.1 79,439 + RR42_RS21195 0.41 -1.2 79,439 + RR42_RS21195 0.41 -0.8 79,440 - RR42_RS21195 0.41 +0.2 79,440 - RR42_RS21195 0.41 -1.4
Or see this region's nucleotide sequence