Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20450

Experiment: Recovery broth with Norfloxacin 0.2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Norfloxacin 0.2 mM
2,411,442	+				-0.8
2,411,444	+				-0.7
2,411,464	-				-0.9
2,411,464	-				+0.2
2,411,476	-				-0.7
2,413,046	+		BBR_RS20450	0.42	-0.4
2,413,046	+		BBR_RS20450	0.42	-1.4
2,413,046	+		BBR_RS20450	0.42	+0.9
2,413,046	+		BBR_RS20450	0.42	-0.4
2,413,046	+		BBR_RS20450	0.42	+1.1
2,413,046	+		BBR_RS20450	0.42	+0.1
2,413,048	+		BBR_RS20450	0.42	-2.3
2,413,060	+		BBR_RS20450	0.42	-0.2
2,413,060	+		BBR_RS20450	0.42	+0.8
2,413,060	+		BBR_RS20450	0.42	+0.2
2,413,060	+		BBR_RS20450	0.42	-0.8
2,413,060	+		BBR_RS20450	0.42	-0.3
2,413,060	+		BBR_RS20450	0.42	+0.2
2,413,060	+		BBR_RS20450	0.42	-0.9
2,413,060	+		BBR_RS20450	0.42	+0.7
2,413,060	+		BBR_RS20450	0.42	-0.6
2,413,060	+		BBR_RS20450	0.42	+0.3
2,413,060	+		BBR_RS20450	0.42	-0.2
2,413,060	+		BBR_RS20450	0.42	-0.2
2,413,060	+		BBR_RS20450	0.42	+0.4
2,413,060	+		BBR_RS20450	0.42	-0.0
2,413,060	+		BBR_RS20450	0.42	+0.2
2,413,062	+		BBR_RS20450	0.42	+0.1
2,413,068	-		BBR_RS20450	0.42	-2.6
2,413,077	+		BBR_RS20450	0.42	-0.8
2,413,077	+		BBR_RS20450	0.42	+0.5
2,413,077	+		BBR_RS20450	0.42	+1.4
2,413,077	+		BBR_RS20450	0.42	+0.0
2,413,077	+		BBR_RS20450	0.42	+1.2
2,413,077	+		BBR_RS20450	0.42	+0.7
2,413,077	+		BBR_RS20450	0.42	+1.2
2,413,082	+		BBR_RS20450	0.43	-0.3
2,413,082	+		BBR_RS20450	0.43	+0.4
2,413,085	-		BBR_RS20450	0.43	-1.0
2,413,092	+		BBR_RS20450	0.43	+0.8
2,413,102	+		BBR_RS20450	0.43	+0.7
2,413,112	-		BBR_RS20450	0.43	-0.4
2,413,130	+		BBR_RS20450	0.44	-0.6
2,413,130	-		BBR_RS20450	0.44	+0.6
2,413,161	+		BBR_RS20450	0.45	+0.5
2,413,163	+		BBR_RS20450	0.45	+0.1
2,413,163	+		BBR_RS20450	0.45	-1.4
2,413,179	-		BBR_RS20450	0.45	-0.6
2,413,182	-		BBR_RS20450	0.45	-0.3
2,413,182	-		BBR_RS20450	0.45	-2.1
2,413,188	-		BBR_RS20450	0.45	-0.3
2,413,190	+		BBR_RS20450	0.45	-1.1
2,413,198	+		BBR_RS20450	0.46	-0.0
2,413,198	-		BBR_RS20450	0.46	-0.7
2,413,204	+		BBR_RS20450	0.46	+0.0
2,413,206	-		BBR_RS20450	0.46	-0.9
2,413,206	-		BBR_RS20450	0.46	+0.1
2,413,210	+		BBR_RS20450	0.46	-0.6
2,413,210	+		BBR_RS20450	0.46	-0.7
2,413,220	+		BBR_RS20450	0.46	+0.2
2,413,220	+		BBR_RS20450	0.46	-1.3
2,413,220	+		BBR_RS20450	0.46	-0.2
2,413,220	+		BBR_RS20450	0.46	+0.4
2,413,220	+		BBR_RS20450	0.46	-0.2
2,413,220	+		BBR_RS20450	0.46	-1.2
2,413,225	+		BBR_RS20450	0.46	-0.5
2,413,225	+		BBR_RS20450	0.46	-1.8
2,413,227	-		BBR_RS20450	0.46	-0.2
2,413,230	+		BBR_RS20450	0.47	+1.0
2,413,233	-		BBR_RS20450	0.47	-0.2
2,413,233	-		BBR_RS20450	0.47	-0.0
2,413,233	-		BBR_RS20450	0.47	+0.5
2,413,233	-		BBR_RS20450	0.47	+1.0
2,413,233	-		BBR_RS20450	0.47	+0.3
2,413,238	+		BBR_RS20450	0.47	-0.2
2,413,238	-		BBR_RS20450	0.47	+0.0
2,413,246	-		BBR_RS20450	0.47	-0.5
2,413,255	+		BBR_RS20450	0.47	+0.7
2,413,263	-		BBR_RS20450	0.47	+1.7
2,413,268	-		BBR_RS20450	0.48	-2.1
2,413,278	-		BBR_RS20450	0.48	-0.2
2,413,286	-		BBR_RS20450	0.48	+1.0
2,413,308	+		BBR_RS20450	0.49	-0.1
2,413,308	+		BBR_RS20450	0.49	-2.0
2,413,313	+		BBR_RS20450	0.49	+0.0
2,413,321	+		BBR_RS20450	0.49	+1.1
2,413,321	+		BBR_RS20450	0.49	+0.6
2,413,328	+		BBR_RS20450	0.49	-1.1
2,413,328	+		BBR_RS20450	0.49	-1.4
2,413,328	+		BBR_RS20450	0.49	+0.7
2,413,328	+		BBR_RS20450	0.49	+0.2
2,413,328	+		BBR_RS20450	0.49	+0.3
2,413,329	+		BBR_RS20450	0.49	+0.6
2,413,329	-		BBR_RS20450	0.49	+0.8
2,413,329	-		BBR_RS20450	0.49	+0.6
2,413,329	-		BBR_RS20450	0.49	-0.8
2,413,329	-		BBR_RS20450	0.49	-0.2
2,413,330	-		BBR_RS20450	0.49	+0.6
2,413,336	-		BBR_RS20450	0.49	+1.4
2,413,352	+		BBR_RS20450	0.50	-1.0
2,413,352	+		BBR_RS20450	0.50	-0.5
2,413,352	-		BBR_RS20450	0.50	-0.1
2,413,382	+		BBR_RS20450	0.51	-0.2
2,413,393	+		BBR_RS20450	0.51	-1.0
2,413,409	-		BBR_RS20450	0.51	-1.1
2,413,411	+		BBR_RS20450	0.51	-0.0
2,413,433	+		BBR_RS20450	0.52	-1.5
2,413,433	+		BBR_RS20450	0.52	+1.0
2,413,474	+		BBR_RS20450	0.53	-0.9
2,413,474	+		BBR_RS20450	0.53	+0.1
2,413,489	+		BBR_RS20450	0.53	-1.0
2,413,489	+		BBR_RS20450	0.53	-0.4
2,413,504	+		BBR_RS20450	0.54	-0.6
2,413,549	+		BBR_RS20450	0.55	+0.6
2,413,561	+		BBR_RS20450	0.55	-2.3
2,413,561	+		BBR_RS20450	0.55	-0.8
2,413,561	+		BBR_RS20450	0.55	-0.1
2,413,658	+		BBR_RS20450	0.58	-0.1
2,413,658	+		BBR_RS20450	0.58	+0.7
2,413,658	+		BBR_RS20450	0.58	+1.1
2,413,663	+		BBR_RS20450	0.58	+0.0
2,413,663	+		BBR_RS20450	0.58	+0.7
2,413,663	+		BBR_RS20450	0.58	+0.1
2,413,666	-		BBR_RS20450	0.58	-1.2
2,413,671	-		BBR_RS20450	0.58	+0.1
2,413,672	+		BBR_RS20450	0.58	+1.1
2,413,672	+		BBR_RS20450	0.58	+0.7
2,413,675	+		BBR_RS20450	0.58	+0.0
2,413,690	-		BBR_RS20450	0.59	-0.1
2,413,768	+		BBR_RS20450	0.61	+0.2
2,413,768	+		BBR_RS20450	0.61	+0.1
2,413,768	+		BBR_RS20450	0.61	-0.1
2,413,768	+		BBR_RS20450	0.61	+1.0
2,413,768	+		BBR_RS20450	0.61	+0.8
2,413,773	-		BBR_RS20450	0.61	-0.2
2,413,834	+		BBR_RS20450	0.63	-0.4
2,413,834	+		BBR_RS20450	0.63	+0.1
2,413,844	-		BBR_RS20450	0.63	+0.4
2,413,871	-		BBR_RS20450	0.63	-1.1
2,413,969	+		BBR_RS20450	0.66	-1.3
2,413,969	+		BBR_RS20450	0.66	-1.1
2,413,969	+		BBR_RS20450	0.66	+0.4
2,413,969	+		BBR_RS20450	0.66	+0.3
2,414,023	+		BBR_RS20450	0.68	-0.9
2,414,023	+		BBR_RS20450	0.68	-0.3
2,414,038	+		BBR_RS20450	0.68	+1.2
2,414,038	+		BBR_RS20450	0.68	+0.6
2,414,038	+		BBR_RS20450	0.68	+0.7
2,414,038	+		BBR_RS20450	0.68	+0.4
2,414,038	+		BBR_RS20450	0.68	+0.6
2,414,048	+		BBR_RS20450	0.68	+0.2
2,414,049	+		BBR_RS20450	0.68	+0.3
2,414,057	+		BBR_RS20450	0.68	+0.6
2,414,059	+		BBR_RS20450	0.68	-0.2
2,414,072	+		BBR_RS20450	0.69	-0.6
2,414,093	+		BBR_RS20450	0.69	-1.3
2,414,093	+		BBR_RS20450	0.69	+0.3
2,414,101	-		BBR_RS20450	0.70	-0.5
2,414,104	+		BBR_RS20450	0.70	-0.2
2,414,106	+		BBR_RS20450	0.70	-0.3
2,414,106	+		BBR_RS20450	0.70	+0.6
2,414,106	+		BBR_RS20450	0.70	+0.2
2,414,106	+		BBR_RS20450	0.70	-0.7
2,414,106	+		BBR_RS20450	0.70	+0.2
2,414,114	-		BBR_RS20450	0.70	-1.5
2,414,116	+		BBR_RS20450	0.70	+2.0
2,414,134	-		BBR_RS20450	0.70	-0.3
2,414,168	+		BBR_RS20450	0.71	-0.1
2,414,173	+		BBR_RS20450	0.71	-2.1
2,414,181	-		BBR_RS20450	0.72	-0.3
2,414,184	+		BBR_RS20450	0.72	+0.6
2,414,184	+		BBR_RS20450	0.72	+0.6
2,414,184	+		BBR_RS20450	0.72	-0.2
2,414,197	+		BBR_RS20450	0.72	-0.2
2,414,229	-		BBR_RS20450	0.73	+0.1
2,414,243	-		BBR_RS20450	0.73	+0.6
2,414,285	-		BBR_RS20450	0.74	+1.2
2,414,286	-		BBR_RS20450	0.74	-0.3
2,414,295	-		BBR_RS20450	0.75	+0.6
2,414,298	+		BBR_RS20450	0.75	-0.1
2,414,299	+		BBR_RS20450	0.75	-1.3
2,414,299	+		BBR_RS20450	0.75	+0.3
2,414,299	+		BBR_RS20450	0.75	+0.4
2,414,308	+		BBR_RS20450	0.75	+1.3
2,414,317	-		BBR_RS20450	0.75	+1.4
2,414,317	-		BBR_RS20450	0.75	-0.2
2,414,317	-		BBR_RS20450	0.75	+0.6
2,414,318	-		BBR_RS20450	0.75	-0.5
2,414,319	+		BBR_RS20450	0.75	-0.5
2,414,331	-		BBR_RS20450	0.76	-0.2
2,414,341	-		BBR_RS20450	0.76	+1.4
2,414,347	+		BBR_RS20450	0.76	+0.2
2,414,356	+		BBR_RS20450	0.76	+0.9
2,414,386	+		BBR_RS20450	0.77	+1.0
2,414,387	+		BBR_RS20450	0.77	-0.8
2,414,390	+		BBR_RS20450	0.77	+1.1
2,414,394	-		BBR_RS20450	0.77	+0.8
2,414,395	-		BBR_RS20450	0.77	-0.2
2,414,459	+		BBR_RS20450	0.79	-0.1
2,414,465	+		BBR_RS20450	0.79	-0.7
2,414,465	+		BBR_RS20450	0.79	-0.3
2,414,465	+		BBR_RS20450	0.79	-1.4
2,414,465	-		BBR_RS20450	0.79	-1.2
2,414,467	-		BBR_RS20450	0.79	-0.4
2,414,479	+		BBR_RS20450	0.80	-1.4
2,414,504	+		BBR_RS20450	0.80	+0.4
2,414,509	+		BBR_RS20450	0.80	+0.8
2,414,510	+		BBR_RS20450	0.80	-0.2
2,414,517	-		BBR_RS20450	0.81	+0.6
2,414,517	-		BBR_RS20450	0.81	-2.0
2,414,519	+		BBR_RS20450	0.81	-0.4
2,414,529	+		BBR_RS20450	0.81	-0.3
2,414,542	+		BBR_RS20450	0.81	+1.7
2,414,546	-		BBR_RS20450	0.81	+1.4
2,414,553	+		BBR_RS20450	0.82	-0.2
2,414,563	+		BBR_RS20450	0.82	-0.8
2,414,563	+		BBR_RS20450	0.82	+0.8
2,414,563	+		BBR_RS20450	0.82	+0.0
2,414,563	+		BBR_RS20450	0.82	+0.1
2,414,563	+		BBR_RS20450	0.82	-0.2
2,414,571	-		BBR_RS20450	0.82	-1.2
2,414,573	+		BBR_RS20450	0.82	+0.4
2,414,582	-		BBR_RS20450	0.82	-0.2
2,414,604	+		BBR_RS20450	0.83	+0.6
2,414,612	+		BBR_RS20450	0.83	+1.2
2,414,612	-		BBR_RS20450	0.83	+0.4
2,414,612	-		BBR_RS20450	0.83	-0.1
2,414,612	-		BBR_RS20450	0.83	-0.5
2,414,613	-		BBR_RS20450	0.83	-0.2
2,414,619	-		BBR_RS20450	0.83	+0.1
2,414,639	-		BBR_RS20450	0.84	+2.4
2,414,656	+		BBR_RS20450	0.84	+0.8
2,414,656	+		BBR_RS20450	0.84	-1.3
2,414,656	+		BBR_RS20450	0.84	+1.4
2,414,656	+		BBR_RS20450	0.84	-0.4
2,414,656	+		BBR_RS20450	0.84	+0.6
2,414,656	+		BBR_RS20450	0.84	+0.2
2,414,656	+		BBR_RS20450	0.84	+0.1
2,414,656	+		BBR_RS20450	0.84	+1.2
2,414,656	+		BBR_RS20450	0.84	-0.1
2,414,656	+		BBR_RS20450	0.84	-0.2
2,414,664	-		BBR_RS20450	0.84	+0.1
2,414,664	-		BBR_RS20450	0.84	-1.1
2,414,664	-		BBR_RS20450	0.84	-0.9
2,414,664	-		BBR_RS20450	0.84	+0.8
2,414,664	-		BBR_RS20450	0.84	+0.6
2,414,687	+		BBR_RS20450	0.85	+0.0
2,414,693	-		BBR_RS20450	0.85	+0.3
2,414,695	-		BBR_RS20450	0.85	+1.8
2,414,695	-		BBR_RS20450	0.85	+0.3
2,414,695	-		BBR_RS20450	0.85	-0.7
2,414,696	-		BBR_RS20450	0.85	-0.5
2,414,697	-		BBR_RS20450	0.85	+0.2
2,414,705	-		BBR_RS20450	0.86	-0.5
2,414,715	-		BBR_RS20450	0.86	+0.1
2,414,723	-		BBR_RS20450	0.86	+0.8
2,414,772	-		BBR_RS20450	0.87	+0.2
2,414,772	-		BBR_RS20450	0.87	+1.0
2,414,777	+		BBR_RS20450	0.87	+0.6
2,414,780	-		BBR_RS20450	0.88	-0.2
2,414,783	+		BBR_RS20450	0.88	+0.2
2,414,785	-		BBR_RS20450	0.88	-0.9
2,414,788	-		BBR_RS20450	0.88	+1.1
2,414,789	+		BBR_RS20450	0.88	+0.0
2,414,793	+		BBR_RS20450	0.88	+0.8
2,414,805	+		BBR_RS20450	0.88	+0.5
2,414,819	+		BBR_RS20450	0.89	-0.3
2,414,820	-		BBR_RS20450	0.89	+0.4
2,414,828	-		BBR_RS20450	0.89	-0.5
2,414,832	-		BBR_RS20450	0.89	-0.1
2,414,832	-		BBR_RS20450	0.89	-0.7
2,414,836	+		BBR_RS20450	0.89	-1.2
2,414,842	+		BBR_RS20450	0.89	-0.1
2,414,849	+		BBR_RS20450	0.89	-0.4
2,414,850	-		BBR_RS20450	0.89	-0.3
2,414,860	+		BBR_RS20450	0.90	-0.1
2,414,862	+		BBR_RS20450	0.90	-0.2
2,414,868	-		BBR_RS20450	0.90	+0.8
2,414,868	-		BBR_RS20450	0.90	+0.4
2,414,878	+				-1.2
2,414,878	+				-0.6
2,414,878	+				-1.0
2,414,885	-				+0.2
2,414,886	-				-1.4
2,414,886	-				+0.4
2,414,886	-				+0.4
2,414,886	-				-0.1
2,414,886	-				+0.1
2,414,887	+				-1.0
2,414,887	+				+0.6
2,414,887	+				+0.4
2,414,895	-				-0.2
2,414,895	-				-0.4
2,414,895	-				-0.1
2,414,897	+				-0.5
2,414,899	+				-0.0
2,414,899	+				-0.3
2,414,906	-				+0.4
2,414,906	-				+0.2
2,414,907	-				-0.4
2,414,917	+				-0.3
2,414,925	-				+1.8
2,414,928	+				+0.0
2,414,928	+				+0.5
2,414,936	-				+0.5
2,414,936	-				+0.6
2,414,936	-				-1.1
2,414,936	-				+0.2
2,414,936	-				+0.7
2,414,936	-				+0.5
2,414,947	-				+0.2
2,414,950	+				-0.7
2,414,956	+				-0.5
2,414,956	+				-0.5
2,414,958	-				-0.3
2,414,964	+				-0.4
2,414,964	-				+0.2
2,414,964	-				-0.7
2,414,964	-				+0.8
2,414,964	-				-0.2
2,414,969	+				-1.8
2,414,985	+				-0.1
2,414,986	-				+1.0
2,414,987	-				-0.5
2,414,991	-				+0.0
2,414,991	-				-0.5
2,414,991	-				-0.7
2,414,992	+				+0.2
2,414,992	+				-0.9
2,414,992	+				+0.2
2,414,993	-				-0.5
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2,415,442	+				-0.4
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2,415,477	+				-1.1
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2,415,544	-				+0.2
2,415,571	+		BBR_RS20455	0.12	+0.7
2,415,590	-		BBR_RS20455	0.14	+1.0
2,415,635	-		BBR_RS20455	0.18	+2.0
2,415,687	-		BBR_RS20455	0.23	+0.4
2,415,695	+		BBR_RS20455	0.24	+0.2
2,415,708	+		BBR_RS20455	0.25	-0.2
2,415,712	+		BBR_RS20455	0.25	+0.3
2,415,740	+		BBR_RS20455	0.28	+0.0
2,415,740	+		BBR_RS20455	0.28	+0.3
2,415,748	-		BBR_RS20455	0.29	-0.8
2,415,758	-		BBR_RS20455	0.30	+0.2
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2,415,920	-		BBR_RS20455	0.46	+0.0
2,415,965	-		BBR_RS20455	0.50	-0.1
2,416,010	-		BBR_RS20455	0.55	-0.9
2,416,015	-		BBR_RS20455	0.55	+1.7
2,416,028	-		BBR_RS20455	0.56	+0.2
2,416,056	-		BBR_RS20455	0.59	-0.6
2,416,058	+		BBR_RS20455	0.59	+0.8
2,416,072	+		BBR_RS20455	0.61	-0.2
2,416,072	+		BBR_RS20455	0.61	+1.7
2,416,080	-		BBR_RS20455	0.62	-1.7
2,416,105	+		BBR_RS20455	0.64	+0.1
2,416,128	-		BBR_RS20455	0.66	+0.4
2,416,141	-		BBR_RS20455	0.68	+0.6
2,416,157	-		BBR_RS20455	0.69	-0.6
2,416,191	+		BBR_RS20455	0.72	+0.0
2,416,235	-		BBR_RS20455	0.77	-1.1