Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13785

Experiment: Recovery broth with Norfloxacin 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13775 and BBR_RS13780 are separated by 119 nucleotidesBBR_RS13780 and BBR_RS13785 are separated by 67 nucleotidesBBR_RS13785 and BBR_RS13790 are separated by 271 nucleotides BBR_RS13775: BBR_RS13775 - isoprenyl transferase, at 863,774 to 864,562 _RS13775 BBR_RS13780: BBR_RS13780 - ABC transporter permease, at 864,682 to 865,458 _RS13780 BBR_RS13785: BBR_RS13785 - myristoyl transferase, at 865,526 to 866,581 _RS13785 BBR_RS13790: BBR_RS13790 - pyridoxal phosphate-dependent aminotransferase, at 866,853 to 868,064 _RS13790 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.569 kb on + strandat 864.577 kb on - strandat 864.782 kb on - strand, within BBR_RS13780at 864.811 kb on - strand, within BBR_RS13780at 864.833 kb on + strand, within BBR_RS13780at 864.962 kb on + strand, within BBR_RS13780at 864.971 kb on - strand, within BBR_RS13780at 864.980 kb on + strand, within BBR_RS13780at 864.985 kb on + strand, within BBR_RS13780at 864.985 kb on + strand, within BBR_RS13780at 864.993 kb on - strand, within BBR_RS13780at 865.026 kb on + strand, within BBR_RS13780at 865.034 kb on - strand, within BBR_RS13780at 865.034 kb on - strand, within BBR_RS13780at 865.034 kb on - strand, within BBR_RS13780at 865.047 kb on - strand, within BBR_RS13780at 865.095 kb on - strand, within BBR_RS13780at 865.140 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.183 kb on + strand, within BBR_RS13780at 865.191 kb on - strand, within BBR_RS13780at 865.200 kb on + strand, within BBR_RS13780at 865.200 kb on + strand, within BBR_RS13780at 865.238 kb on - strand, within BBR_RS13780at 865.263 kb on + strand, within BBR_RS13780at 865.497 kb on - strandat 865.497 kb on - strandat 865.504 kb on + strandat 865.514 kb on + strandat 865.514 kb on + strandat 865.522 kb on - strandat 865.522 kb on - strandat 865.540 kb on + strandat 865.540 kb on + strandat 865.571 kb on - strandat 865.573 kb on + strandat 865.577 kb on - strandat 865.590 kb on + strandat 865.629 kb on + strandat 865.629 kb on + strandat 865.637 kb on - strand, within BBR_RS13785at 865.667 kb on - strand, within BBR_RS13785at 865.680 kb on - strand, within BBR_RS13785at 865.714 kb on + strand, within BBR_RS13785at 865.730 kb on - strand, within BBR_RS13785at 865.760 kb on + strand, within BBR_RS13785at 865.763 kb on - strand, within BBR_RS13785at 865.763 kb on - strand, within BBR_RS13785at 865.763 kb on - strand, within BBR_RS13785at 865.794 kb on + strand, within BBR_RS13785at 865.818 kb on - strand, within BBR_RS13785at 865.826 kb on - strand, within BBR_RS13785at 865.878 kb on - strand, within BBR_RS13785at 865.904 kb on - strand, within BBR_RS13785at 865.949 kb on + strand, within BBR_RS13785at 865.952 kb on - strand, within BBR_RS13785at 865.957 kb on - strand, within BBR_RS13785at 865.984 kb on - strand, within BBR_RS13785at 866.099 kb on - strand, within BBR_RS13785at 866.099 kb on - strand, within BBR_RS13785at 866.116 kb on - strand, within BBR_RS13785at 866.117 kb on + strand, within BBR_RS13785at 866.125 kb on - strand, within BBR_RS13785at 866.156 kb on - strand, within BBR_RS13785at 866.161 kb on + strand, within BBR_RS13785at 866.164 kb on - strand, within BBR_RS13785at 866.164 kb on - strand, within BBR_RS13785at 866.182 kb on + strand, within BBR_RS13785at 866.190 kb on - strand, within BBR_RS13785at 866.190 kb on - strand, within BBR_RS13785at 866.315 kb on + strand, within BBR_RS13785at 866.347 kb on - strand, within BBR_RS13785at 866.347 kb on - strand, within BBR_RS13785at 866.381 kb on + strand, within BBR_RS13785at 866.472 kb on - strand, within BBR_RS13785at 866.524 kb on - strandat 866.529 kb on - strandat 866.543 kb on - strandat 866.553 kb on + strandat 866.583 kb on - strandat 866.604 kb on - strandat 866.634 kb on - strandat 866.634 kb on - strandat 866.644 kb on + strandat 866.763 kb on + strandat 866.810 kb on - strandat 866.810 kb on - strandat 866.819 kb on + strandat 866.827 kb on - strandat 866.833 kb on - strandat 866.838 kb on + strandat 866.840 kb on + strandat 866.840 kb on + strandat 866.846 kb on - strandat 866.848 kb on - strandat 866.917 kb on - strandat 866.935 kb on + strandat 866.940 kb on + strandat 866.945 kb on + strandat 866.950 kb on + strandat 866.950 kb on + strandat 866.986 kb on + strand, within BBR_RS13790at 866.987 kb on - strand, within BBR_RS13790at 866.987 kb on - strand, within BBR_RS13790at 867.000 kb on - strand, within BBR_RS13790at 867.013 kb on + strand, within BBR_RS13790at 867.021 kb on - strand, within BBR_RS13790at 867.078 kb on - strand, within BBR_RS13790at 867.111 kb on + strand, within BBR_RS13790at 867.122 kb on - strand, within BBR_RS13790at 867.143 kb on - strand, within BBR_RS13790at 867.155 kb on - strand, within BBR_RS13790at 867.180 kb on - strand, within BBR_RS13790at 867.191 kb on + strand, within BBR_RS13790at 867.197 kb on - strand, within BBR_RS13790at 867.221 kb on - strand, within BBR_RS13790at 867.244 kb on - strand, within BBR_RS13790at 867.260 kb on + strand, within BBR_RS13790at 867.277 kb on + strand, within BBR_RS13790at 867.304 kb on + strand, within BBR_RS13790at 867.369 kb on + strand, within BBR_RS13790at 867.471 kb on - strand, within BBR_RS13790

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Per-strain Table

Position Strand Gene LocusTag Fraction Recovery broth with Norfloxacin 0.2 mM
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864,569 + -1.2
864,577 - -0.6
864,782 - BBR_RS13780 0.13 -0.4
864,811 - BBR_RS13780 0.17 +0.4
864,833 + BBR_RS13780 0.19 +0.6
864,962 + BBR_RS13780 0.36 -0.3
864,971 - BBR_RS13780 0.37 -1.6
864,980 + BBR_RS13780 0.38 +0.6
864,985 + BBR_RS13780 0.39 -0.8
864,985 + BBR_RS13780 0.39 -0.3
864,993 - BBR_RS13780 0.40 -0.9
865,026 + BBR_RS13780 0.44 +0.7
865,034 - BBR_RS13780 0.45 +0.1
865,034 - BBR_RS13780 0.45 -0.2
865,034 - BBR_RS13780 0.45 +0.2
865,047 - BBR_RS13780 0.47 -1.2
865,095 - BBR_RS13780 0.53 -1.0
865,140 + BBR_RS13780 0.59 -1.7
865,183 + BBR_RS13780 0.64 -1.4
865,183 + BBR_RS13780 0.64 +0.6
865,183 + BBR_RS13780 0.64 +0.4
865,183 + BBR_RS13780 0.64 +1.3
865,183 + BBR_RS13780 0.64 -0.4
865,183 + BBR_RS13780 0.64 -0.8
865,183 + BBR_RS13780 0.64 +0.1
865,191 - BBR_RS13780 0.66 +0.0
865,200 + BBR_RS13780 0.67 -0.8
865,200 + BBR_RS13780 0.67 +0.2
865,238 - BBR_RS13780 0.72 -0.1
865,263 + BBR_RS13780 0.75 -1.3
865,497 - +0.1
865,497 - -0.7
865,504 + +0.7
865,514 + +0.7
865,514 + +0.5
865,522 - -0.6
865,522 - +0.5
865,540 + +1.1
865,540 + -0.1
865,571 - -0.5
865,573 + -1.4
865,577 - -2.1
865,590 + -0.4
865,629 + -1.4
865,629 + -0.1
865,637 - BBR_RS13785 0.11 -0.0
865,667 - BBR_RS13785 0.13 +1.4
865,680 - BBR_RS13785 0.15 -1.7
865,714 + BBR_RS13785 0.18 -0.2
865,730 - BBR_RS13785 0.19 -1.2
865,760 + BBR_RS13785 0.22 -1.0
865,763 - BBR_RS13785 0.22 -1.3
865,763 - BBR_RS13785 0.22 -0.0
865,763 - BBR_RS13785 0.22 -0.8
865,794 + BBR_RS13785 0.25 +0.4
865,818 - BBR_RS13785 0.28 +0.1
865,826 - BBR_RS13785 0.28 +0.4
865,878 - BBR_RS13785 0.33 +1.5
865,904 - BBR_RS13785 0.36 +0.2
865,949 + BBR_RS13785 0.40 -1.5
865,952 - BBR_RS13785 0.40 +2.5
865,957 - BBR_RS13785 0.41 +0.1
865,984 - BBR_RS13785 0.43 -0.7
866,099 - BBR_RS13785 0.54 +0.0
866,099 - BBR_RS13785 0.54 -0.7
866,116 - BBR_RS13785 0.56 -0.8
866,117 + BBR_RS13785 0.56 -0.2
866,125 - BBR_RS13785 0.57 +0.4
866,156 - BBR_RS13785 0.60 -0.1
866,161 + BBR_RS13785 0.60 +0.2
866,164 - BBR_RS13785 0.60 -1.2
866,164 - BBR_RS13785 0.60 -1.4
866,182 + BBR_RS13785 0.62 -0.3
866,190 - BBR_RS13785 0.63 -0.5
866,190 - BBR_RS13785 0.63 -0.4
866,315 + BBR_RS13785 0.75 +0.8
866,347 - BBR_RS13785 0.78 -1.0
866,347 - BBR_RS13785 0.78 -1.6
866,381 + BBR_RS13785 0.81 -0.4
866,472 - BBR_RS13785 0.90 -1.4
866,524 - +0.9
866,529 - +0.9
866,543 - +1.0
866,553 + +0.9
866,583 - -0.2
866,604 - +0.4
866,634 - +0.5
866,634 - -0.7
866,644 + +0.2
866,763 + +0.3
866,810 - -0.7
866,810 - +0.4
866,819 + -0.6
866,827 - +0.7
866,833 - -0.1
866,838 + +0.4
866,840 + -0.2
866,840 + +0.4
866,846 - -0.7
866,848 - -0.2
866,917 - +0.8
866,935 + -0.6
866,940 + +0.4
866,945 + +1.1
866,950 + +0.4
866,950 + +0.6
866,986 + BBR_RS13790 0.11 +0.7
866,987 - BBR_RS13790 0.11 -0.3
866,987 - BBR_RS13790 0.11 -0.3
867,000 - BBR_RS13790 0.12 +0.3
867,013 + BBR_RS13790 0.13 -1.6
867,021 - BBR_RS13790 0.14 -0.7
867,078 - BBR_RS13790 0.19 +0.3
867,111 + BBR_RS13790 0.21 -0.1
867,122 - BBR_RS13790 0.22 +0.5
867,143 - BBR_RS13790 0.24 -0.6
867,155 - BBR_RS13790 0.25 +0.3
867,180 - BBR_RS13790 0.27 -0.7
867,191 + BBR_RS13790 0.28 -0.4
867,197 - BBR_RS13790 0.28 +0.1
867,221 - BBR_RS13790 0.30 -0.4
867,244 - BBR_RS13790 0.32 -0.3
867,260 + BBR_RS13790 0.34 -0.5
867,277 + BBR_RS13790 0.35 -0.7
867,304 + BBR_RS13790 0.37 +0.3
867,369 + BBR_RS13790 0.43 -0.1
867,471 - BBR_RS13790 0.51 -2.1

Or see this region's nucleotide sequence