Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004531

Experiment: RCH2_defined_glucose_5mM with hydroxide 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004529 and ABIE53_004530 are separated by 9 nucleotidesABIE53_004530 and ABIE53_004531 are separated by 41 nucleotidesABIE53_004531 and ABIE53_004532 are separated by 591 nucleotides ABIE53_004529: ABIE53_004529 - hypothetical protein, at 718,115 to 719,341 _004529 ABIE53_004530: ABIE53_004530 - glutamine cyclotransferase, at 719,351 to 720,004 _004530 ABIE53_004531: ABIE53_004531 - MFS family permease, at 720,046 to 721,416 _004531 ABIE53_004532: ABIE53_004532 - hypothetical protein, at 722,008 to 722,355 _004532 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 719.313 kb on + strandat 719.313 kb on + strandat 719.314 kb on - strandat 719.339 kb on + strandat 719.339 kb on + strandat 719.384 kb on + strandat 719.385 kb on - strandat 719.385 kb on - strandat 719.426 kb on + strand, within ABIE53_004530at 719.426 kb on + strand, within ABIE53_004530at 719.426 kb on + strand, within ABIE53_004530at 719.426 kb on + strand, within ABIE53_004530at 719.427 kb on - strand, within ABIE53_004530at 719.427 kb on - strand, within ABIE53_004530at 719.509 kb on - strand, within ABIE53_004530at 719.607 kb on + strand, within ABIE53_004530at 719.608 kb on - strand, within ABIE53_004530at 719.608 kb on - strand, within ABIE53_004530at 719.688 kb on - strand, within ABIE53_004530at 719.947 kb on + strandat 720.002 kb on + strandat 720.002 kb on + strandat 720.098 kb on + strandat 720.126 kb on - strandat 720.179 kb on + strandat 720.179 kb on + strandat 720.179 kb on + strandat 720.179 kb on + strandat 720.179 kb on + strandat 720.179 kb on + strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.180 kb on - strandat 720.206 kb on + strand, within ABIE53_004531at 720.207 kb on - strand, within ABIE53_004531at 720.210 kb on - strand, within ABIE53_004531at 720.291 kb on + strand, within ABIE53_004531at 720.294 kb on - strand, within ABIE53_004531at 720.344 kb on + strand, within ABIE53_004531at 720.344 kb on + strand, within ABIE53_004531at 720.344 kb on + strand, within ABIE53_004531at 720.344 kb on + strand, within ABIE53_004531at 720.467 kb on + strand, within ABIE53_004531at 720.467 kb on + strand, within ABIE53_004531at 720.467 kb on + strand, within ABIE53_004531at 720.467 kb on + strand, within ABIE53_004531at 720.467 kb on + strand, within ABIE53_004531at 720.468 kb on - strand, within ABIE53_004531at 720.516 kb on + strand, within ABIE53_004531at 720.623 kb on + strand, within ABIE53_004531at 720.623 kb on + strand, within ABIE53_004531at 720.623 kb on + strand, within ABIE53_004531at 720.624 kb on - strand, within ABIE53_004531at 720.624 kb on - strand, within ABIE53_004531at 720.776 kb on + strand, within ABIE53_004531at 720.777 kb on - strand, within ABIE53_004531at 720.872 kb on - strand, within ABIE53_004531at 720.888 kb on + strand, within ABIE53_004531at 721.037 kb on - strand, within ABIE53_004531at 721.067 kb on + strand, within ABIE53_004531at 721.067 kb on + strand, within ABIE53_004531at 721.126 kb on - strand, within ABIE53_004531at 721.259 kb on + strand, within ABIE53_004531at 721.450 kb on + strandat 721.671 kb on + strandat 721.671 kb on + strandat 721.672 kb on - strandat 721.672 kb on - strandat 721.704 kb on + strandat 721.705 kb on - strandat 721.705 kb on - strandat 721.773 kb on + strandat 721.945 kb on + strandat 721.946 kb on - strandat 721.952 kb on + strandat 721.952 kb on + strandat 721.952 kb on + strandat 721.953 kb on - strandat 721.956 kb on + strandat 721.956 kb on + strandat 721.957 kb on - strandat 721.994 kb on - strandat 721.994 kb on - strandat 722.007 kb on + strandat 722.007 kb on + strandat 722.008 kb on - strandat 722.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with hydroxide 1 mM
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719,313 + +0.4
719,313 + -1.5
719,314 - +0.2
719,339 + -0.8
719,339 + +0.1
719,384 + -0.4
719,385 - +0.8
719,385 - +0.7
719,426 + ABIE53_004530 0.11 -1.8
719,426 + ABIE53_004530 0.11 -0.1
719,426 + ABIE53_004530 0.11 +1.1
719,426 + ABIE53_004530 0.11 +1.0
719,427 - ABIE53_004530 0.12 -0.2
719,427 - ABIE53_004530 0.12 +2.0
719,509 - ABIE53_004530 0.24 -1.6
719,607 + ABIE53_004530 0.39 -0.5
719,608 - ABIE53_004530 0.39 +0.4
719,608 - ABIE53_004530 0.39 -0.8
719,688 - ABIE53_004530 0.52 +0.5
719,947 + +0.0
720,002 + -0.4
720,002 + -0.4
720,098 + +2.6
720,126 - +1.2
720,179 + +0.5
720,179 + +0.9
720,179 + -0.3
720,179 + -1.0
720,179 + +0.4
720,179 + +3.6
720,180 - +1.1
720,180 - -1.9
720,180 - -1.6
720,180 - -1.0
720,180 - -0.5
720,180 - +1.5
720,180 - -0.2
720,180 - -0.3
720,180 - -0.6
720,206 + ABIE53_004531 0.12 +0.8
720,207 - ABIE53_004531 0.12 -0.1
720,210 - ABIE53_004531 0.12 -0.2
720,291 + ABIE53_004531 0.18 +0.4
720,294 - ABIE53_004531 0.18 -0.2
720,344 + ABIE53_004531 0.22 +0.3
720,344 + ABIE53_004531 0.22 -0.6
720,344 + ABIE53_004531 0.22 +1.0
720,344 + ABIE53_004531 0.22 -1.7
720,467 + ABIE53_004531 0.31 +2.0
720,467 + ABIE53_004531 0.31 -0.2
720,467 + ABIE53_004531 0.31 -0.1
720,467 + ABIE53_004531 0.31 -0.7
720,467 + ABIE53_004531 0.31 -0.3
720,468 - ABIE53_004531 0.31 -0.0
720,516 + ABIE53_004531 0.34 -0.2
720,623 + ABIE53_004531 0.42 +0.2
720,623 + ABIE53_004531 0.42 -0.3
720,623 + ABIE53_004531 0.42 -0.0
720,624 - ABIE53_004531 0.42 +1.7
720,624 - ABIE53_004531 0.42 +3.9
720,776 + ABIE53_004531 0.53 -0.0
720,777 - ABIE53_004531 0.53 -0.8
720,872 - ABIE53_004531 0.60 +1.0
720,888 + ABIE53_004531 0.61 -2.1
721,037 - ABIE53_004531 0.72 +1.4
721,067 + ABIE53_004531 0.74 +2.2
721,067 + ABIE53_004531 0.74 +1.0
721,126 - ABIE53_004531 0.79 +1.0
721,259 + ABIE53_004531 0.88 -1.5
721,450 + -0.6
721,671 + +1.2
721,671 + +0.8
721,672 - +0.4
721,672 - -0.4
721,704 + +0.0
721,705 - -1.8
721,705 - -0.0
721,773 + +0.5
721,945 + -1.4
721,946 - +0.5
721,952 + +1.0
721,952 + +2.2
721,952 + -1.6
721,953 - -0.0
721,956 + -1.2
721,956 + +0.3
721,957 - -0.3
721,994 - +0.8
721,994 - -0.2
722,007 + +0.2
722,007 + -0.0
722,008 - -0.0
722,354 - -0.3

Or see this region's nucleotide sequence