Experiment: MoYLS4 with Nickel Chloride 1.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1451 and dtd overlap by 38 nucleotides dtd and fadD are separated by 4 nucleotides fadD and ispD are separated by 157 nucleotides
DVU1451: DVU1451 - response regulator (TIGR), at 1,529,130 to 1,530,299
DVU1451
DVU1452: dtd - D-tyrosyl-tRNA(Tyr) deacylase (TIGR), at 1,530,262 to 1,530,750
dtd
DVU1453: fadD - long-chain-fatty-acid--CoA ligase (TIGR), at 1,530,755 to 1,532,449
fadD
DVU1454: ispD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (TIGR), at 1,532,607 to 1,533,794
ispD
Position (kb) 1530
1531
1532
1533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1529.768 kb on + strand, within DVU1451 at 1529.880 kb on - strand, within DVU1451 at 1529.946 kb on + strand, within DVU1451 at 1530.021 kb on + strand, within DVU1451 at 1530.034 kb on - strand, within DVU1451 at 1530.070 kb on + strand, within DVU1451 at 1530.225 kb on + strand at 1530.267 kb on + strand at 1530.313 kb on + strand, within dtd at 1530.511 kb on + strand, within dtd at 1530.680 kb on - strand, within dtd at 1530.761 kb on - strand at 1530.851 kb on - strand at 1530.891 kb on - strand at 1530.909 kb on - strand at 1530.929 kb on - strand, within fadD at 1530.946 kb on - strand, within fadD at 1530.960 kb on + strand, within fadD at 1530.968 kb on - strand, within fadD at 1530.968 kb on - strand, within fadD at 1531.163 kb on - strand, within fadD at 1531.179 kb on + strand, within fadD at 1531.187 kb on - strand, within fadD at 1531.206 kb on + strand, within fadD at 1531.214 kb on - strand, within fadD at 1531.270 kb on - strand, within fadD at 1531.359 kb on + strand, within fadD at 1531.359 kb on + strand, within fadD at 1531.359 kb on + strand, within fadD at 1531.367 kb on - strand, within fadD at 1531.367 kb on - strand, within fadD at 1531.367 kb on - strand, within fadD at 1531.404 kb on + strand, within fadD at 1531.456 kb on + strand, within fadD at 1531.591 kb on + strand, within fadD at 1531.654 kb on + strand, within fadD at 1531.693 kb on + strand, within fadD at 1531.699 kb on + strand, within fadD at 1531.743 kb on + strand, within fadD at 1531.753 kb on + strand, within fadD at 1531.794 kb on - strand, within fadD at 1531.853 kb on + strand, within fadD at 1531.884 kb on + strand, within fadD at 1531.914 kb on - strand, within fadD at 1531.928 kb on + strand, within fadD at 1531.976 kb on - strand, within fadD at 1532.058 kb on + strand, within fadD at 1532.131 kb on + strand, within fadD at 1532.133 kb on + strand, within fadD at 1532.389 kb on + strand at 1532.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nickel Chloride 1.5mM remove 1,529,768 + DVU1451 0.55 +0.0 1,529,880 - DVU1451 0.64 +2.7 1,529,946 + DVU1451 0.70 -2.0 1,530,021 + DVU1451 0.76 -0.8 1,530,034 - DVU1451 0.77 +0.3 1,530,070 + DVU1451 0.80 -0.4 1,530,225 + -0.3 1,530,267 + -1.2 1,530,313 + dtd DVU1452 0.10 -0.2 1,530,511 + dtd DVU1452 0.51 +0.1 1,530,680 - dtd DVU1452 0.85 -0.1 1,530,761 - +0.1 1,530,851 - +0.1 1,530,891 - -0.2 1,530,909 - -0.8 1,530,929 - fadD DVU1453 0.10 +1.1 1,530,946 - fadD DVU1453 0.11 -0.4 1,530,960 + fadD DVU1453 0.12 +0.0 1,530,968 - fadD DVU1453 0.13 -2.6 1,530,968 - fadD DVU1453 0.13 +0.2 1,531,163 - fadD DVU1453 0.24 -1.6 1,531,179 + fadD DVU1453 0.25 -0.1 1,531,187 - fadD DVU1453 0.25 +0.1 1,531,206 + fadD DVU1453 0.27 +0.4 1,531,214 - fadD DVU1453 0.27 +0.7 1,531,270 - fadD DVU1453 0.30 -0.5 1,531,359 + fadD DVU1453 0.36 -0.2 1,531,359 + fadD DVU1453 0.36 -0.0 1,531,359 + fadD DVU1453 0.36 +0.2 1,531,367 - fadD DVU1453 0.36 +0.1 1,531,367 - fadD DVU1453 0.36 +0.3 1,531,367 - fadD DVU1453 0.36 +0.4 1,531,404 + fadD DVU1453 0.38 -0.4 1,531,456 + fadD DVU1453 0.41 -0.2 1,531,591 + fadD DVU1453 0.49 +1.1 1,531,654 + fadD DVU1453 0.53 -0.9 1,531,693 + fadD DVU1453 0.55 +1.7 1,531,699 + fadD DVU1453 0.56 +0.6 1,531,743 + fadD DVU1453 0.58 +0.9 1,531,753 + fadD DVU1453 0.59 +0.4 1,531,794 - fadD DVU1453 0.61 +0.1 1,531,853 + fadD DVU1453 0.65 -0.3 1,531,884 + fadD DVU1453 0.67 +0.2 1,531,914 - fadD DVU1453 0.68 +0.1 1,531,928 + fadD DVU1453 0.69 -0.1 1,531,976 - fadD DVU1453 0.72 -0.4 1,532,058 + fadD DVU1453 0.77 +1.0 1,532,131 + fadD DVU1453 0.81 +0.9 1,532,133 + fadD DVU1453 0.81 -0.0 1,532,389 + +0.8 1,532,570 + -1.5
Or see this region's nucleotide sequence