Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25635

Experiment: Carbon source Phenylacetic 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25630 and RR42_RS25635 are separated by 103 nucleotidesRR42_RS25635 and RR42_RS25640 are separated by 17 nucleotides RR42_RS25630: RR42_RS25630 - transporter, at 1,093,125 to 1,094,438 _RS25630 RR42_RS25635: RR42_RS25635 - methylmalonate-semialdehyde dehydrogenase, at 1,094,542 to 1,096,065 _RS25635 RR42_RS25640: RR42_RS25640 - 3-hydroxyisobutyrate dehydrogenase, at 1,096,083 to 1,096,979 _RS25640 Position (kb) 1094 1095 1096 1097Strain fitness (log2 ratio) -1 0 1at 1094.538 kb on - strandat 1096.302 kb on + strand, within RR42_RS25640at 1096.302 kb on + strand, within RR42_RS25640

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
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1,094,538 - +1.4
1,096,302 + RR42_RS25640 0.24 -0.8
1,096,302 + RR42_RS25640 0.24 +0.5

Or see this region's nucleotide sequence