Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24025

Experiment: Carbon source Phenylacetic 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24020 and RR42_RS24025 are separated by 119 nucleotidesRR42_RS24025 and RR42_RS24030 are separated by 17 nucleotides RR42_RS24020: RR42_RS24020 - transporter, at 712,423 to 713,736 _RS24020 RR42_RS24025: RR42_RS24025 - methylmalonate-semialdehyde dehydrogenase, at 713,856 to 715,379 _RS24025 RR42_RS24030: RR42_RS24030 - 3-hydroxyisobutyrate dehydrogenase, at 715,397 to 716,293 _RS24030 Position (kb) 713 714 715 716Strain fitness (log2 ratio) -1 0 1at 713.870 kb on - strandat 714.904 kb on + strand, within RR42_RS24025at 715.616 kb on + strand, within RR42_RS24030at 715.616 kb on + strand, within RR42_RS24030

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
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713,870 - -0.7
714,904 + RR42_RS24025 0.69 -0.4
715,616 + RR42_RS24030 0.24 -0.1
715,616 + RR42_RS24030 0.24 +0.2

Or see this region's nucleotide sequence