Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS05100 and RR42_RS05105 are separated by 2 nucleotides RR42_RS05105 and RR42_RS05110 are separated by 45 nucleotides RR42_RS05110 and RR42_RS05115 are separated by 153 nucleotides
RR42_RS05100: RR42_RS05100 - acetaldehyde dehydrogenase, at 1,125,769 to 1,126,734
_RS05100
RR42_RS05105: RR42_RS05105 - 2-keto-4-pentenoate hydratase, at 1,126,737 to 1,127,528
_RS05105
RR42_RS05110: RR42_RS05110 - betaine-aldehyde dehydrogenase, at 1,127,574 to 1,129,043
_RS05110
RR42_RS05115: RR42_RS05115 - LysR family transcriptional regulator, at 1,129,197 to 1,130,165
_RS05115
Position (kb) 1127
1128
1129
1130 Strain fitness (log2 ratio) -1
0
1 at 1127.608 kb on + strand at 1127.608 kb on + strand at 1127.788 kb on + strand, within RR42_RS05110 at 1127.924 kb on - strand, within RR42_RS05110 at 1128.057 kb on - strand, within RR42_RS05110 at 1128.619 kb on + strand, within RR42_RS05110 at 1128.620 kb on - strand, within RR42_RS05110 at 1128.658 kb on + strand, within RR42_RS05110 at 1128.660 kb on + strand, within RR42_RS05110 at 1128.660 kb on + strand, within RR42_RS05110 at 1128.661 kb on - strand, within RR42_RS05110 at 1128.847 kb on - strand, within RR42_RS05110 at 1129.097 kb on + strand at 1129.098 kb on - strand at 1129.098 kb on - strand at 1129.098 kb on - strand at 1129.100 kb on - strand at 1129.100 kb on - strand at 1129.123 kb on + strand at 1129.629 kb on - strand, within RR42_RS05115 at 1129.888 kb on + strand, within RR42_RS05115 at 1129.889 kb on - strand, within RR42_RS05115
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 1,127,608 + -0.5 1,127,608 + -0.5 1,127,788 + RR42_RS05110 0.15 +0.5 1,127,924 - RR42_RS05110 0.24 -0.4 1,128,057 - RR42_RS05110 0.33 +0.9 1,128,619 + RR42_RS05110 0.71 +0.1 1,128,620 - RR42_RS05110 0.71 -0.2 1,128,658 + RR42_RS05110 0.74 +0.0 1,128,660 + RR42_RS05110 0.74 -1.0 1,128,660 + RR42_RS05110 0.74 +1.6 1,128,661 - RR42_RS05110 0.74 +1.2 1,128,847 - RR42_RS05110 0.87 +0.5 1,129,097 + +0.1 1,129,098 - +0.1 1,129,098 - -0.2 1,129,098 - -0.1 1,129,100 - -1.2 1,129,100 - -0.7 1,129,123 + -0.0 1,129,629 - RR42_RS05115 0.45 -1.6 1,129,888 + RR42_RS05115 0.71 +1.5 1,129,889 - RR42_RS05115 0.71 -0.8
Or see this region's nucleotide sequence