Experiment: Carbon source Phenylacetic 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00275 and RR42_RS00280 are separated by 81 nucleotides RR42_RS00280 and RR42_RS00285 are separated by 269 nucleotides RR42_RS00285 and RR42_RS00290 are separated by 43 nucleotides
RR42_RS00275: RR42_RS00275 - galactarate dehydratase, at 80,545 to 82,113
_RS00275
RR42_RS00280: RR42_RS00280 - glutathione peroxidase, at 82,195 to 82,746
_RS00280
RR42_RS00285: RR42_RS00285 - thiamine biosynthesis protein ThiS, at 83,016 to 83,285
_RS00285
RR42_RS00290: RR42_RS00290 - sialidase, at 83,329 to 84,483
_RS00290
Position (kb) 82
83 Strain fitness (log2 ratio) -1
0
1
2 at 81.518 kb on - strand, within RR42_RS00275 at 81.518 kb on - strand, within RR42_RS00275 at 81.604 kb on + strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.605 kb on - strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.736 kb on + strand, within RR42_RS00275 at 81.737 kb on - strand, within RR42_RS00275 at 81.742 kb on + strand, within RR42_RS00275 at 81.743 kb on - strand, within RR42_RS00275 at 81.872 kb on - strand, within RR42_RS00275 at 82.107 kb on + strand at 82.277 kb on - strand, within RR42_RS00280 at 82.425 kb on - strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.487 kb on + strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.488 kb on - strand, within RR42_RS00280 at 82.568 kb on - strand, within RR42_RS00280 at 82.599 kb on - strand, within RR42_RS00280 at 82.619 kb on + strand, within RR42_RS00280 at 82.620 kb on - strand, within RR42_RS00280 at 82.620 kb on - strand, within RR42_RS00280 at 82.730 kb on + strand at 82.731 kb on - strand at 82.731 kb on - strand at 82.791 kb on + strand at 82.881 kb on + strand at 82.881 kb on + strand at 82.882 kb on - strand at 82.953 kb on + strand at 83.142 kb on + strand, within RR42_RS00285 at 83.143 kb on - strand, within RR42_RS00285 at 83.144 kb on + strand, within RR42_RS00285 at 83.144 kb on + strand, within RR42_RS00285 at 83.473 kb on + strand, within RR42_RS00290 at 83.473 kb on + strand, within RR42_RS00290 at 83.473 kb on + strand, within RR42_RS00290 at 83.474 kb on - strand, within RR42_RS00290 at 83.474 kb on - strand, within RR42_RS00290 at 83.474 kb on - strand, within RR42_RS00290 at 83.485 kb on - strand, within RR42_RS00290 at 83.510 kb on + strand, within RR42_RS00290 at 83.510 kb on + strand, within RR42_RS00290 at 83.511 kb on - strand, within RR42_RS00290 at 83.511 kb on - strand, within RR42_RS00290 at 83.564 kb on - strand, within RR42_RS00290
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM remove 81,518 - RR42_RS00275 0.62 -0.6 81,518 - RR42_RS00275 0.62 -0.1 81,604 + RR42_RS00275 0.67 +0.1 81,605 - RR42_RS00275 0.68 +0.5 81,605 - RR42_RS00275 0.68 +0.4 81,605 - RR42_RS00275 0.68 -0.1 81,605 - RR42_RS00275 0.68 +0.3 81,736 + RR42_RS00275 0.76 +0.5 81,736 + RR42_RS00275 0.76 +0.2 81,736 + RR42_RS00275 0.76 +1.0 81,737 - RR42_RS00275 0.76 -0.6 81,742 + RR42_RS00275 0.76 +0.8 81,743 - RR42_RS00275 0.76 -1.6 81,872 - RR42_RS00275 0.85 -0.2 82,107 + -0.8 82,277 - RR42_RS00280 0.15 -0.3 82,425 - RR42_RS00280 0.42 +0.3 82,487 + RR42_RS00280 0.53 -1.3 82,487 + RR42_RS00280 0.53 -1.1 82,487 + RR42_RS00280 0.53 -0.3 82,488 - RR42_RS00280 0.53 -0.3 82,488 - RR42_RS00280 0.53 -0.2 82,488 - RR42_RS00280 0.53 -1.5 82,568 - RR42_RS00280 0.68 -0.3 82,599 - RR42_RS00280 0.73 -0.3 82,619 + RR42_RS00280 0.77 -0.2 82,620 - RR42_RS00280 0.77 -0.1 82,620 - RR42_RS00280 0.77 -0.0 82,730 + -1.2 82,731 - -0.8 82,731 - -0.1 82,791 + -0.5 82,881 + +0.2 82,881 + -0.3 82,882 - +2.4 82,953 + -0.2 83,142 + RR42_RS00285 0.47 +1.3 83,143 - RR42_RS00285 0.47 -1.2 83,144 + RR42_RS00285 0.47 +0.2 83,144 + RR42_RS00285 0.47 +0.7 83,473 + RR42_RS00290 0.12 -0.3 83,473 + RR42_RS00290 0.12 -0.8 83,473 + RR42_RS00290 0.12 +0.7 83,474 - RR42_RS00290 0.13 -0.2 83,474 - RR42_RS00290 0.13 +0.6 83,474 - RR42_RS00290 0.13 -1.5 83,485 - RR42_RS00290 0.14 -0.2 83,510 + RR42_RS00290 0.16 -0.8 83,510 + RR42_RS00290 0.16 -1.2 83,511 - RR42_RS00290 0.16 -0.0 83,511 - RR42_RS00290 0.16 +0.3 83,564 - RR42_RS00290 0.20 +0.3
Or see this region's nucleotide sequence