Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00010

Experiment: Carbon source Phenylacetic 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS00005 and RR42_RS00010 are separated by 477 nucleotidesRR42_RS00010 and RR42_RS00015 are separated by 227 nucleotides RR42_RS00005: RR42_RS00005 - chromosomal replication initiator protein DnaA, at 607 to 2,394 _RS00005 RR42_RS00010: RR42_RS00010 - DNA polymerase III subunit beta, at 2,872 to 3,996 _RS00010 RR42_RS00015: RR42_RS00015 - DNA gyrase subunit B, at 4,224 to 6,761 _RS00015 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1 2at 2.476 kb on + strandat 2.476 kb on + strandat 2.476 kb on + strandat 2.477 kb on - strandat 2.477 kb on - strandat 2.477 kb on - strandat 2.477 kb on - strandat 2.477 kb on - strandat 2.481 kb on + strandat 2.481 kb on + strandat 2.482 kb on - strandat 2.482 kb on - strandat 2.482 kb on - strandat 2.482 kb on - strandat 2.482 kb on - strandat 2.486 kb on + strandat 2.486 kb on + strandat 2.487 kb on - strandat 2.726 kb on + strandat 2.805 kb on + strandat 2.827 kb on + strandat 2.864 kb on + strandat 4.041 kb on + strandat 4.041 kb on + strandat 4.144 kb on + strandat 4.215 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 2.5 mM
remove
2,476 + +1.1
2,476 + +0.7
2,476 + +0.3
2,477 - -0.7
2,477 - -0.1
2,477 - +0.2
2,477 - +0.7
2,477 - +1.4
2,481 + -1.6
2,481 + +1.1
2,482 - -0.2
2,482 - -1.1
2,482 - +0.4
2,482 - -0.0
2,482 - -0.5
2,486 + +1.9
2,486 + +1.2
2,487 - +0.9
2,726 + -0.1
2,805 + -0.3
2,827 + +0.2
2,864 + -0.6
4,041 + +0.4
4,041 + +0.4
4,144 + -0.4
4,215 + -0.8

Or see this region's nucleotide sequence